mlist/SPONGE: Sparse Partial Correlations On Gene Expression

This package provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input. The SPONGE package now also includes spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape.

Getting started

Package details

Bioconductor views GeneExpression GeneRegulation MachineLearning NetworkInference RandomForest Regression SystemsBiology Transcription Transcriptomics
LicenseGPL (>=3)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
mlist/SPONGE documentation built on July 2, 2022, 2:46 a.m.