mlist/SPONGE: Sparse Partial Correlations On Gene Expression

This package provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input.

Getting started

Package details

AuthorMarkus List, Azim Dehghani Amirabad, Dennis Kostka, Marcel H. Schulz
Bioconductor views GeneExpression GeneRegulation NetworkInference Regression SystemsBiology Transcription Transcriptomics
MaintainerMarkus List <>
LicenseGPL (>=3)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
mlist/SPONGE documentation built on Oct. 21, 2020, 7:18 p.m.