fn_get_semi_random_OE: Function to calculate semi random enrichment scores of...

In mlist/SPONGE: Sparse Partial Correlations On Gene Expression

Function to calculate semi random enrichment scores of modules OE (functions taken from: Jerby-Arnon et al. 2018)

Description

Function to calculate semi random enrichment scores of modules OE (functions taken from: Jerby-Arnon et al. 2018)

Usage

fn_get_semi_random_OE(r, genes.dist.q, b.sign, num.rounds = 1000)

Arguments

r	expression matrix
genes.dist.q	values of the genes after binning (result of binning)
b.sign	does the signature contain less than 2 genes? (controll parameter) (is set by mother function (OE module function))
num.rounds	number of rounds (default: 1000)

Value

random signature scores

mlist/SPONGE documentation built on Feb. 12, 2023, 1:22 a.m.