Files in mlist/SPONGE
Sparse Partial Correlations On Gene Expression

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/data.R R/fn_benchmark.R R/fn_check_and_convert_expr_data.R R/fn_elastic_net.R R/fn_gene_miRNA_F_test.R R/fn_gene_miRNA_regression_models.R R/fn_network_centralities.R R/fn_plot_simulation_results.R R/fn_plots.R R/fn_significance.R R/fn_simulation.R R/fn_sponge.R R/fn_subsampling.R README.md
SPONGE.Rproj
data/ceRNA_interactions.RData
data/gene_expr.RData
data/mir_expr.RData
data/mir_interactions.RData
data/mircode.RData
data/precomputed_null_model.rda
data/scor_simulation_cov_matrices.RData
data/targetscan.RData
man/ceRNA_interactions.Rd man/check_and_convert_expression_data.Rd man/fn_elasticnet.Rd man/fn_gene_miRNA_F_test.Rd man/fn_get_model_coef.Rd man/fn_get_rss.Rd man/fn_get_shared_miRNAs.Rd man/gene_expr.Rd man/genes_pairwise_combinations.Rd man/mir_expr.Rd man/mir_interactions.Rd man/mircode_ensg.Rd man/mircode_symbol.Rd man/precomputed_cov_matrices.Rd man/precomputed_null_model.Rd man/sample_zero_mscor_cov.Rd man/sample_zero_mscor_data.Rd man/sponge.Rd man/sponge_build_null_model.Rd man/sponge_compute_p_values.Rd man/sponge_edge_centralities.Rd man/sponge_gene_miRNA_interaction_filter.Rd man/sponge_network.Rd man/sponge_node_centralities.Rd man/sponge_plot_network.Rd man/sponge_plot_network_centralities.Rd man/sponge_plot_simulation_results.Rd man/sponge_run_benchmark.Rd man/sponge_subsampling.Rd man/targetscan_ensg.Rd man/targetscan_symbol.Rd
sponge_logo.svg
tests/testthat.R tests/testthat/test_cor_df_cut.R tests/testthat/test_elastic_net.R tests/testthat/test_network_analysis.R tests/testthat/test_regression_filter.R tests/testthat/test_significance.R tests/testthat/test_simulation.R tests/testthat/test_sponge.R vignettes/SPONGE.Rmd
vignettes/overview.png
vignettes/sponge_logo.png
vignettes/sponge_logo.svg
mlist/SPONGE documentation built on Dec. 15, 2017, 6:52 a.m.