sponge_plot_network: Plot a sponge network

In mlist/SPONGE: Sparse Partial Correlations On Gene Expression

Plot a sponge network

Description

Plot a sponge network

Usage

sponge_plot_network(
  sponge_result,
  mir_data,
  layout = "layout.fruchterman.reingold",
  force.directed = FALSE,
  ...
)

Arguments

sponge_result	ceRNA interactions as produced by the sponge method.
mir_data	miRNA interactions as produced by sponge_gene_miRNA_interaction_filter
layout	one of the layout methods supported in the visNetwork package
force.directed	whether to produce a force directed network, gets slow for large networks
...	further params for sponge_network

Value

shows a plot

Examples

sponge_plot_network(ceRNA_interactions, mir_interactions)

mlist/SPONGE documentation built on Feb. 12, 2023, 1:22 a.m.