API for mlist/SPONGE
Sparse Partial Correlations On Gene Expression

Global functions
ceRNA_interactions Man page
checkLambda Source code
check_and_convert_expression_data Man page Source code
compute_null_model Source code
compute_p_values Source code
compute_pcor Source code
determine_cutoffs_for_null_model_partitioning Source code
dtcomb Source code
fn_elasticnet Man page Source code
fn_gene_miRNA_F_test Man page Source code
fn_get_model_coef Man page Source code
fn_get_rss Man page Source code
fn_get_shared_miRNAs Man page Source code
gene_expr Man page
genes_pairwise_combinations Man page Source code
get.q Source code
isplitDT2 Source code
mir_expr Man page
mir_interactions Man page
mircode_ensg Man page
mircode_symbol Man page
posdef Source code
precomputed_cov_matrices Man page
precomputed_null_model Man page
quadraticSolver Source code
sample_zero_mscor_cov Man page Source code
sample_zero_mscor_data Man page Source code
schur Source code
split_rows Source code
sponge Man page Source code
sponge_build_null_model Man page Source code
sponge_compute_p_values Man page Source code
sponge_edge_centralities Man page Source code
sponge_gene_miRNA_interaction_filter Man page Source code
sponge_network Man page Source code
sponge_node_centralities Man page Source code
sponge_plot_network Man page Source code
sponge_plot_network_centralities Man page Source code
sponge_plot_simulation_results Man page Source code
sponge_run_benchmark Man page Source code
sponge_subsampling Man page Source code
targetscan_ensg Man page
targetscan_symbol Man page
mlist/SPONGE documentation built on Sept. 13, 2017, 8:51 a.m.