Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.
|Author||Oliver Philipp [aut, cre], Ina Koch [ctb]|
|Date of publication||None|
|Maintainer||Oliver Philipp <email@example.com>|
|License||GPL (>= 2)|
addReference: Add reference species
ai: Data set to predict autophagy induction in _Podospora...
getHybridNetwork: Get hybrid network of the predicted PPI
getPPI: Get predicted PPI
homologyScore: Computes homology scores
Path2PPI: Class '"Path2PPI"'
plot.Path2PPI: Plots the predicted PPI
predictPPI: Prediction of the PPI
removeReference: Remove reference species
showInteraction: Information about an interaction
showReferences: Information about reference species