Path2PPI: Prediction of pathway-related protein-protein interaction networks

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Path2PPI")
AuthorOliver Philipp [aut, cre], Ina Koch [ctb]
Bioconductor views Network NetworkInference Pathways Proteomics SystemsBiology
Date of publicationNone
MaintainerOliver Philipp <contact@oliverphilipp.info>
LicenseGPL (>= 2)
Version1.4.0
http://www.bioinformatik.uni-frankfurt.de/

View on Bioconductor

Functions

addReference Man page
addReference,Path2PPI-method Man page
ai Man page
getHybridNetwork Man page
getHybridNetwork,Path2PPI-method Man page
getPPI Man page
getPPI,Path2PPI-method Man page
homologyScore Man page
human.ai.irefindex Man page
human.ai.proteins Man page
initialize,Path2PPI-method Man page
pa2human.ai.homologs Man page
pa2yeast.ai.homologs Man page
Path2PPI Man page
Path2PPI-class Man page
plot.Path2PPI Man page
plot.Path2PPI,Path2PPI-method Man page
predictPPI Man page
predictPPI,Path2PPI-method Man page
removeReference Man page
removeReference,Path2PPI-method Man page
showInteraction Man page
showInteraction-methods Man page
showInteraction,Path2PPI-method Man page
show,Path2PPI-method Man page
showReferences Man page
showReferences,Path2PPI-method Man page
yeast.ai.irefindex Man page
yeast.ai.proteins Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.