rHVDM: Hidden Variable Dynamic Modeling

A R implementation of HVDM (Genome Biol 2006, V7(3) R25)

Author
Martino Barenco
Date of publication
None
Maintainer
Martino Barenco<m.barenco@ucl.ac.uk>
License
GPL-2
Version
1.40.0

View on Bioconductor

Man pages

estimerrors
computes the standard deviation of the measurement error...
fitgene
Fits the optimal kinetic parameter values for a particular...
fitgene.lin
Fits the optimal kinetic parameter values for a particular...
fitgene.nl
Fits the optimal kinetic parameter values for a particular...
fiveGyMAS5
Example data for the rHVDM package (time course of irradiated...
genestoscreen
Genes differentially expressed
HVDMcheck
Checks that an object of class ExpressionSet is compliant...
HVDMreport
generates an HTML report using the input
leastnoisychips
Identifiers of the three least noisy arrays in the p53...
p53traingenes
Known p53 targets
rHVDMplattforms
plattform-specific repository allowing to estimate...
screening
Fits the optimal kinetic parameter values for several genes.
screening.nl
Fits the optimal kinetic parameter values for several genes...
training
Performs the HVDM training step and returns a list containing...
training.nl
Performs the HVDM training step and returns a list containing...
twodosesMAS5
Example data for the rHVDM package (time course of irradiated...

Files in this package

rHVDM/DESCRIPTION
rHVDM/NAMESPACE
rHVDM/R
rHVDM/R/coreHVDM.R
rHVDM/R/linearHVDM.R
rHVDM/R/measurementerrorHVDM.R
rHVDM/R/nonlinearHVDM.R
rHVDM/R/outputHVDM.R
rHVDM/R/userfcnHVDM.R
rHVDM/R/userfcnlinearHVDM.R
rHVDM/R/userfcnnonlinearHVDM.R
rHVDM/build
rHVDM/build/vignette.rds
rHVDM/data
rHVDM/data/HVDMexample.rda
rHVDM/data/HVDMexample2.rda
rHVDM/data/datalist
rHVDM/data/plattforms.rda
rHVDM/inst
rHVDM/inst/doc
rHVDM/inst/doc/rHVDM.R
rHVDM/inst/doc/rHVDM.Rnw
rHVDM/inst/doc/rHVDM.pdf
rHVDM/man
rHVDM/man/HVDMcheck.Rd
rHVDM/man/HVDMreport.Rd
rHVDM/man/estimerrors.Rd
rHVDM/man/fitgene.Rd
rHVDM/man/fitgene.lin.Rd
rHVDM/man/fitgene.nl.Rd
rHVDM/man/fiveGyMAS5.Rd
rHVDM/man/genestoscreen.Rd
rHVDM/man/leastnoisychips.Rd
rHVDM/man/p53traingenes.Rd
rHVDM/man/rHVDMplattforms.Rd
rHVDM/man/screening.Rd
rHVDM/man/screening.nl.Rd
rHVDM/man/training.Rd
rHVDM/man/training.nl.Rd
rHVDM/man/twodosesMAS5.Rd
rHVDM/vignettes
rHVDM/vignettes/rHVDM.Rnw
rHVDM/vignettes/rHVDM.bib