Biocview "FeatureExtraction"

Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix
A Hybrid Feature Selection method for gene expression data
A Hybrid Feature Selection method for gene expression data
Analysis of Brain Imaging Data
An Interactive Consensus Clustering Framework for Multi-platform Data Analysis
An Interactive Consensus Clustering Framework for Multi-platform Data Analysis
an R package for analysis, visualization and biomarker discovery of microbiome
an R package for analysis, visualization and biomarker discovery of microbiome
an R package for analysis, visualization and biomarker discovery of microbiome
an R package for analysis, visualization and biomarker discovery of microbiome
A package for nonlinear dimension reduction with Isomap and LLE.
A package for nonlinear dimension reduction with Isomap and LLE.
A package to extract spatial features based on multiplex IF images
A package to extract spatial features based on multiplex IF images
A package to extract spatial features based on multiplex IF images
a region-based method for quantitating the conservation and divergence of methylation patterns between species by high order features
A sensitive and fast tool for detection of TAD boundaries
A suite of functions to facilitate zFPKM transformations
A suite of functions to facilitate zFPKM transformations
A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning
A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning
A t-SNE framework to visualize OMICs data
Batch Effects Correction with Unknown Subtypes
Batch Effects Correction with Unknown Subtypes
Bayesian clustering and imputationa of single cell methylomes
Bayesian clustering and imputationa of single cell methylomes
Bayesian modelling of cell-to-cell DNA methylation heterogeneity
Classification and Feature Selection for 'Omics' Datasets
Classification and Feature Selection for 'Omics' Datasets
Clustering of (epigenetic) DNA methylation data using a variational Bayes NMF algorithm
Comprehensive Annotation of Predictive Features for Interval-based Genomic Data
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
Computational pipeline for computing probability of modification from structure probing experiment data
Computational pipeline for computing probability of modification from structure probing experiment data
Decomposing Heterogeneous Cohorts using Omic Data Profiling
Decomposing Heterogeneous Cohorts using Omic Data Profiling
Deconvolution of mixed cells from spatial and/or bulk gene expression data
Deconvolution of mixed cells from spatial and/or bulk gene expression data
Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Determination of essential phenotypic elements of clusters in high-dimensional entities
Determination of essential phenotypic elements of clusters in high-dimensional entities
Differential abundance analysis with a right censored covariate in high-dimensional cytometry
Differential discovery in high-dimensional cytometry via high-resolution clustering
Differential discovery in high-dimensional cytometry via high-resolution clustering
Evaluation of Bioinformatics Metrics
Evaluation of Bioinformatics Metrics
Fast Correlation Based Filter for Feature Selection
Fast Correlation Based Filter for Feature Selection
FEAture SelcTion (FEAST) for Single-cell clustering
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets
GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets
Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Genome wide association studies of multiple traits with Bayesian multilvel models
Genome wide association studies of multiple traits with Bayesian multilvel models
Genome wide association studies of multiple traits with Bayesian multilvel models
gin in R
gin in R
GWAS Incorporating Networks
GWAS Incorporating Networks
Hits Selection for Synthetic Lethal RNAi Screen Data
Identify Different Architectures of Sequence Elements
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
Interactive SummarizedExperiment Explorer
Interactive visualization of scRNA-seq data with Cerebro
iSEE Universe
iSEE Universe
iSEE Universe
Iteratively Adjusted Surrogate Variable Analysis
Iteratively Adjusted Surrogate Variable Analysis
Iteratively Adjusted Surrogate Variable Analysis
KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline
KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Model higher-order methylation profiles
Model higher-order methylation profiles
Model higher-order methylation profiles
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles
Multi Omic Master Regulator Analysis
Multi Omic Master Regulator Analysis
Network-Regularized Regression Models
preciseTAD: A machine learning framework for precise TAD boundary prediction
preciseTAD: A machine learning framework for precise TAD boundary prediction
preciseTAD: A machine learning framework for precise TAD boundary prediction
Predict open reading frames in nucleotide sequences
Reference-guided isoform reconstruction and quantification for long read RNA-Seq data
Reference-guided isoform reconstruction and quantification for long read RNA-Seq data
sigFeature: Significant feature selection using SVM-RFE & t-statistic
sigFeature: Significant feature selection using SVM-RFE & t-statistic
Signature-based Clustering for Diagnostic Purposes
Signature-based Clustering for Diagnostic Purposes
Signature-based Clustering for Diagnostic Purposes
Signature discovery from omics data
Single Cell Shiny Application for Analysing Single Cell Transcriptomics Data
SpectralTAD: Hierarchical TAD detection using spectral clustering
SpectralTAD: Hierarchical TAD detection using spectral clustering
SpectralTAD: Hierarchical TAD detection using spectral clustering
Statistical analysis of RNA editing sites and hyper-editing regions
Statistical analysis of RNA editing sites and hyper-editing regions
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Suffix Array Kernel Smoothing for discovery of correlative sequence motifs and multi-motif domains
Summarize, Analyze and Visualize MAF Files
Summarize, Analyze and Visualize MAF Files
Summarize, Analyze and Visualize MAF Files
Supervised mutational signatures
TADCompare: Identification and characterization of differential TADs
TADCompare: Identification and characterization of differential TADs
TADCompare: Identification and characterization of differential TADs
Time-Course Multi-Omics data integration
Time-Course Multi-Omics data integration
Time-Course Multi-Omics data integration
Tools for region- and process-centric analyses of multiple assay types
Tree Aggregation