TADCompare: TADCompare: Identification and characterization of differential TADs

TADCompare is an R package designed to identify and characterize differential Topologically Associated Domains (TADs) between multiple Hi-C contact matrices. It contains functions for finding differential TADs between two datasets, finding differential TADs over time and identifying consensus TADs across multiple matrices. It takes all of the main types of HiC input and returns simple, comprehensive, easy to analyze results.

Package details

Author Kellen Cresswell <cresswellkg@vcu.edu>, Mikhail Dozmorov <mikhail.dozmorov@vcuhealth.org>
Bioconductor views Clustering FeatureExtraction HiC Sequencing Software
MaintainerKellen Cresswell <cresswellkg@vcu.edu>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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TADCompare documentation built on Nov. 8, 2020, 6:48 p.m.