csoneson/iSEE: Interactive SummarizedExperiment Explorer

Provides functions for creating an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. Particular attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

Getting started

Package details

Bioconductor views CellBasedAssays Clustering DimensionReduction FeatureExtraction GUI GeneExpression SingleCell Transcription Transcriptomics Visualization
Maintainer
LicenseMIT + file LICENSE
Version1.3.1
URL https://github.com/csoneson/iSEE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("csoneson/iSEE")
csoneson/iSEE documentation built on Nov. 19, 2018, 12:56 p.m.