Man pages for csoneson/iSEE
Interactive SummarizedExperiment Explorer
| addCustomLabelsCommands | Add custom label plotting commands |
| addLabelCentersCommands | Add centered label plotting commands |
| addMultiSelectionCommands | Add multiple selection plotting commands |
| addTourStep | Add a step to the tour |
| aes-utils | Generate ggplot aesthetic instructions |
| cache-utils | Caching utilities |
| checkColormapCompatibility | Check compatibility between ExperimentColorMap and... |
| class-utils | Set default slot values |
| cleanDataset | Clean the dataset |
| collapseBox | A collapsible box |
| ColumnDataPlot-class | The ColumnDataPlot panel |
| ColumnDataTable-class | The ColumnDataTable panel |
| ColumnDotPlot-class | The ColumnDotPlot virtual class |
| ColumnTable-class | The ColumnTable class |
| ComplexHeatmapPlot-class | The ComplexHeatmapPlot panel |
| conditional-utils | Conditional elements on radio or checkbox selection |
| constants | Constants |
| createCustomDimnamesModalObservers | Create observers for a modal for custom dimnames |
| createCustomPanels | Create custom panels |
| createLandingPage | Create a landing page |
| createProtectedParameterObservers | Define parameter observers |
| defaultTour | Define the default tour |
| documentation-generics | Documentation generics |
| DotPlot-class | The DotPlot virtual class |
| ExperimentColorMap-class | ExperimentColorMap class |
| extractAssaySubmatrix | Extract assay submatrix |
| FeatureAssayPlot-class | The FeatureAssayPlot panel |
| filterDTColumn | Filter 'DT' columns |
| getEncodedName | Get panel names |
| getPanelColor | Get panel colors |
| interface-generics | Generics for the panel interface |
| interface-wrappers | 'iSEE' UI element wrappers |
| iSEE | iSEE: interactive SummarizedExperiment Explorer |
| iSEEOptions | Global 'iSEE' options |
| iSEE-pkg | iSEE: interactive SummarizedExperiment/SingleCellExperiment... |
| jitterPoints | Jitter points for categorical variables |
| labs-utils | Generate ggplot title and label instructions |
| lassoPoints | Find rows of data within a closed lasso |
| manage_commands | Manage commands to be evaluated |
| metadata-plot-generics | Generics for row/column metadata plots |
| multi-select-generics | Generics for controlling multiple selections |
| multiSelectionToFactor | Convert multiple selections into a factor |
| observer-generics | Generic for the panel observers |
| output-generics | Generics for Panel outputs |
| Panel-class | The Panel virtual class |
| panelDefaults | Panel defaults |
| plot-generics | Generics for DotPlot plotting |
| plot-utils | Process faceting choices |
| processMultiSelections | Process multiple selections |
| ReducedDimensionPlot-class | The ReducedDimensionPlot panel |
| registerAppOptions | Set and get app-level options |
| removeInvalidChoices | Remove invalid values in multiple choices |
| replaceMissingWithFirst | Replace with first choice |
| requestUpdate | Request Panel updates |
| retrieveOutput | Retrieve the panel output |
| RowDataPlot-class | The RowDataPlot panel |
| RowDataTable-class | The RowDataTable panel |
| RowDotPlot-class | The RowDotPlot virtual class |
| RowTable-class | The RowTable class |
| SampleAssayPlot-class | The SampleAssayPlot panel |
| selectionColorMap | Define the selection colormap |
| setCachedCommonInfo | Set and get cached commons |
| setup-generics | Generics for setting up parameters |
| single-select-generics | Generics for controlling single selections |
| specific-tours | UI-specific tour management utilities |
| subsetPointsByGrid | Subset points for faster plotting |
| synchronizeAssays | Synchronize assay colormaps to match those in a... |
| Table-class | The Table class |
| table-generics | Generics for table construction |
| track-utils | Track internal events |
| validate-utils | Validation error utilities |
| visual-parameters-generics | Generics for visual DotPlot parameters |
