API for csoneson/iSEE
Interactive SummarizedExperiment Explorer

Global functions
Custom iSEE plots Man page
ExperimentColorMap Man page Source code
ExperimentColorMap-class Man page
activeColormap Source code
add_color_to_column_plot Source code
add_color_to_row_plot Source code
add_command Source code
add_facet_UI_elements_for_column_plots Source code
add_facet_UI_elements_for_row_plots Source code
add_facets Source code
add_general_parameters Source code
add_general_parameters_for_column_plots Source code
add_general_parameters_for_row_plots Source code
add_other_UI_elements Source code
add_point_UI_elements Source code
annotateEnsembl Man page Source code
annotateEntrez Man page Source code
any_point_selection Source code
assay,ExperimentColorMap,character-method Man page
assay,ExperimentColorMap,numeric-method Man page
assayAllColorMap Source code
assayColorMap Man page Source code
assayColorMap,ExperimentColorMap,character-method Man page
assayColorMap,ExperimentColorMap,numeric-method Man page
assayColorMap<- Man page
assayColorMap<-,ExperimentColorMap,character-method Man page
assayColorMap<-,ExperimentColorMap,numeric-method Man page
assayNames,ExperimentColorMap-method Man page
assayNames<-,ExperimentColorMap,ANY-method Man page
assays,ExperimentColorMap-method Man page
assays<-,ExperimentColorMap,list-method Man page
build_aes Source code
build_labs Source code
check_plot_feasibility Source code
choose_link Source code
choose_new_selection_source Source code
choose_plot_type Source code
class:ExperimentColorMap Man page
cluster_genes Source code
coerce_box_status Source code
coerce_type Source code
colData,ExperimentColorMap-method Man page
colData<-,ExperimentColorMap,ANY-method Man page
colDataAllColorMap Source code
colDataColorMap Man page Source code
colDataColorMap,ExperimentColorMap,character-method Man page
colDataColorMap<- Man page
colDataColorMap<-,ExperimentColorMap,character-method Man page
colDataPlotDefaults Man page Source code
collapseBox Source code
conditional_on_check_group Source code
conditional_on_check_solo Source code
conditional_on_radio Source code
create_color_scale Source code
create_plot Source code
create_points Source code
create_selection_param_box Source code
create_visual_box_for_column_plots Source code
create_visual_box_for_row_plots Source code
customColPlotDefaults Man page Source code
decode_panel_name Source code
decoded2encoded Source code
defaultColorMap Source code
defaultDiscreteColorMap Source code
defaults Man page
define_color_options_for_column_plots Source code
define_color_options_for_row_plots Source code
define_colorby_for_column_plot Source code
define_colorby_for_row_plot Source code
define_facetby_for_column_plot Source code
define_facetby_for_row_plot Source code
define_groups Source code
define_link_sources Source code
define_plot_links Source code
define_shape_options_for_column_plots Source code
define_shape_options_for_row_plots Source code
define_shapeby_for_column_plot Source code
define_shapeby_for_row_plot Source code
define_table_links Source code
define_visual_options Source code
delete_table_links Source code
dentical_brushes Source code
deparse_for_viewing Source code
destroy_selection_panel Source code
destroy_table Source code
downsample_points Source code
encode_panel_name Source code
establish_eval_order Source code
evaluate_commands Source code
extract_nested_DF Source code
extract_plotting_data Source code
featAssayPlotDefaults Man page Source code
gene_axis_label Source code
get_colorscale_limits Source code
get_heatmap_fill_cmd Source code
get_internal_info Source code
get_reporting_order Source code
get_selected_points Source code
get_selection_dependents Source code
globalColorMap Source code
heatMapPlotDefaults Man page Source code
iSEE Man page Source code
iSEE-pkg Man page
iSEE-pkg-package Man page
isColorMapCompatible Man page Source code
jitterSquarePoints Man page Source code
jitterViolinPoints Man page Source code
lassoPoints Man page Source code
make_colDataPlot Source code
make_customColPlot Source code
make_featAssayPlot Source code
make_heatMapPlot Source code
make_redDimPlot Source code
make_rowDataPlot Source code
make_sampAssayPlot Source code
make_single_aes Source code
make_single_lab Source code
modeGating Man page Source code
modify_table_links Source code
name2index Source code
ncrement_counter Source code
nitialize_cmd_store Source code
nlevels Source code
nullColorMap Source code
onLoad Source code
override_defaults Source code
panel_generation Source code
panel_organization Source code
plot_wrapper Source code
precompute_UI_info Source code
process_selectby_choice Source code
redDimPlotDefaults Man page Source code
regenerate_unselected_plot Source code
replaceAssayColorMap Source code
replaceColDataColorMap Source code
replaceRowDataColorMap Source code
report_memory Source code
rowData,ExperimentColorMap-method Man page
rowData<-,ExperimentColorMap,ANY-method Man page
rowDataAllColorMap Source code
rowDataColorMap Man page Source code
rowDataColorMap,ExperimentColorMap,character-method Man page
rowDataColorMap<- Man page
rowDataColorMap<-,ExperimentColorMap,character-method Man page
rowDataPlotDefaults Man page Source code
rowStatTableDefaults Man page Source code
s_groupable Source code
safe_field_name Source code
sampAssayPlotDefaults Man page Source code
sanitize_SE_input Source code
sanitize_controlled_colormaps Source code
sanitize_memory Source code
sanitize_names Source code
scatter_plot Source code
self_brush_box Source code
self_lasso_path Source code
set_default_assay Source code
set_default_discrete Source code
setup_initial Source code
setup_memory Source code
setup_table_observer Source code
snapshot_graph_linkedpanels Source code
spawn_selection_chart Source code
spawn_table_links Source code
split_encoded Source code
square_plot Source code
square_setup Source code
subsetPointsByGrid Man page Source code
substituteNullColorMap Source code
synchronizeAssays Man page Source code
text_eval Source code
track_it_all Source code
transform_global_to_local_y Source code
transmitted_selection Source code
update_lasso Source code
update_list_element Source code
valid.Colormap Source code
violin_plot Source code
violin_setup Source code
which_groupable Source code
csoneson/iSEE documentation built on July 15, 2018, 3:42 p.m.