Single Cell sHiny APPlication (SCHNAPPs) is a R/Shiny based application to interact, manipulate, explore, and analyze single cell RNA-seq experiments, including MARS-seq and others. The application is open and extendable. The main idea is to be able to run basic visualization and analyses, including normalization, clustering,... on a defined subset of cells/genes. Key is, that all computations are based only on the cells that have been selected. Input can be a SingleCellExperiment object or CSV/TSV files of the count matrix.
|Bioconductor views||CellBasedAssays Clustering Coverage DataImport DimensionReduction FeatureExtraction GUI GeneExpression ImmunoOncology Normalization Sequencing SingleCell Transcription Transcriptomics Visualization|
|Maintainer||Bernd Jagla <[email protected]>|
|Package repository||View on GitHub|
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