C3BI-pasteur-fr/UTechSCB-SCHNAPPs: Single Cell Shiny Application for Analysing Single Cell Transcriptomics Data
Single Cell sHiny APPlication (SCHNAPPs) is a R/Shiny based application to interact, manipulate, explore, and analyze single cell RNA-seq experiments, including MARS-seq and others. The application is open and extendable. The main idea is to be able to run basic visualization and analyses, including normalization, clustering,... on a defined subset of cells/genes. Key is, that all computations are based only on the cells that have been selected. Input can be a SingleCellExperiment object or CSV/TSV files of the count matrix.
Getting started
Browse package contents
Package details |
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| Bioconductor views | CellBasedAssays Clustering Coverage DataImport DimensionReduction FeatureExtraction GUI GeneExpression ImmunoOncology Normalization Sequencing SingleCell Transcription Transcriptomics Visualization |
| Maintainer | Bernd Jagla <bernd.jagla@pasteur.fr> |
| License | GPL-3 |
| Version | 1.15.19 |
| URL | https://github.com/C3BI-pasteur-fr/UTechSCB-SCHNAPPs |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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