C3BI-pasteur-fr/UTechSCB-SCHNAPPs: Single Cell Shiny Application for Analysing Single Cell Transcriptomics Data

Single Cell sHiny APPlication (SCHNAPPs) is a R/Shiny based application to interact, manipulate, explore, and analyze single cell RNA-seq experiments, including MARS-seq and others. The application is open and extendable. The main idea is to be able to run basic visualization and analyses, including normalization, clustering,... on a defined subset of cells/genes. Key is, that all computations are based only on the cells that have been selected. Input can be a SingleCellExperiment object or CSV/TSV files of the count matrix.

Getting started

Package details

Bioconductor views CellBasedAssays Clustering Coverage DataImport DimensionReduction FeatureExtraction GUI GeneExpression ImmunoOncology Normalization Sequencing SingleCell Transcription Transcriptomics Visualization
MaintainerBernd Jagla <bernd.jagla@pasteur.fr>
URL https://github.com/C3BI-pasteur-fr/UTechSCB-SCHNAPPs
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
C3BI-pasteur-fr/UTechSCB-SCHNAPPs documentation built on May 23, 2021, 8:24 p.m.