Files in C3BI-pasteur-fr/UTechSCB-SCHNAPPs
Single Cell Shiny Application for Analysing Single Cell Transcriptomics Data

.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md
.gitignore
CONTRIBUTING.md
DESCRIPTION
NAMESPACE
R/schnapps-Main.R
R/sysdata.rda
README.md
SCHNAPPs.Rproj
_pkgdown.yml
data/scEx.RData
docs/404.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/FAQs.html
docs/articles/Readme.html
docs/articles/SCHNAPPs_usage.html
docs/articles/images/2Dplot1.png
docs/articles/images/2dplotAddOptions.png
docs/articles/images/2dplotSmallGrp.png
docs/articles/images/CellSelection.png
docs/articles/images/DataexplorationPanel.png
docs/articles/images/coexpressionAll.png
docs/articles/images/coexpressionSOM1.png
docs/articles/images/coexpressionSOM2.png
docs/articles/images/coexpressionSelected1.png
docs/articles/images/coexpressionSelected2.png
docs/articles/images/coexpressionSelected3.png
docs/articles/images/coexpressionVioloin1.png
docs/articles/images/coexpressionVioloin2.png
docs/articles/images/dataexplorationExpression.png
docs/articles/images/geneSelection1.png
docs/articles/images/geneSelection2.png
docs/articles/images/generalPC.png
docs/articles/images/generalSample.png
docs/articles/images/generalScater1.png
docs/articles/images/generalScater2.png
docs/articles/images/generalUMI.png
docs/articles/images/heatmap1.png
docs/articles/images/heatmap2.png
docs/articles/images/heatmap3.png
docs/articles/images/loadingData.png
docs/articles/images/overview.png
docs/articles/images/parametersGeneral.png
docs/articles/images/parametersNormalization.png
docs/articles/images/parametersTSNE.png
docs/articles/images/parametersUMAP.png
docs/articles/images/subclusteranalysis1.png
docs/articles/images/subclusteranalysis2.png
docs/articles/images/table1.png
docs/articles/images/tableAll.png
docs/articles/images/tableReorder.png
docs/articles/images/tableSelect2.png
docs/articles/index.html
docs/articles/pkdown/FAQs.html
docs/articles/pkdown/SCHNAPPs_usage.html
docs/articles/pkdown/images/2Dplot1.png
docs/articles/pkdown/images/2dplotAddOptions.png
docs/articles/pkdown/images/2dplotSmallGrp.png
docs/articles/pkdown/images/CellSelection.png
docs/articles/pkdown/images/CellSelection2.png
docs/articles/pkdown/images/DataexplorationPanel.png
docs/articles/pkdown/images/beforeFilter.png
docs/articles/pkdown/images/beforeFilterApplied.png
docs/articles/pkdown/images/beforeFilterCellSelect.png
docs/articles/pkdown/images/beforeFilterCellsRM.png
docs/articles/pkdown/images/cd8vscd4.png
docs/articles/pkdown/images/coexpressionAll.png
docs/articles/pkdown/images/coexpressionSOM1.png
docs/articles/pkdown/images/coexpressionSOM2.png
docs/articles/pkdown/images/coexpressionSelected1.png
docs/articles/pkdown/images/coexpressionSelected2.png
docs/articles/pkdown/images/coexpressionSelected3.png
docs/articles/pkdown/images/coexpressionViolin1.png
docs/articles/pkdown/images/coexpressionViolin2.png
docs/articles/pkdown/images/coexpressionVioloin1.png
docs/articles/pkdown/images/coexpressionVioloin2.png
docs/articles/pkdown/images/dataexplorationExpression.png
docs/articles/pkdown/images/geneSelection1.png
docs/articles/pkdown/images/geneSelection2.png
docs/articles/pkdown/images/geneSelectionRMGenes.png
docs/articles/pkdown/images/geneSelectionRegEx.png
docs/articles/pkdown/images/generalPC.png
docs/articles/pkdown/images/generalSample.png
docs/articles/pkdown/images/generalScater1.png
docs/articles/pkdown/images/generalScater2.png
docs/articles/pkdown/images/generalUMI.png
docs/articles/pkdown/images/heatmap1.png
docs/articles/pkdown/images/heatmap2.png
docs/articles/pkdown/images/heatmap3.png
docs/articles/pkdown/images/loadingData.png
docs/articles/pkdown/images/normByRP.png
docs/articles/pkdown/images/overview.png
docs/articles/pkdown/images/parametersGeneral.png
docs/articles/pkdown/images/parametersNormalization.png
docs/articles/pkdown/images/parametersTSNE.png
docs/articles/pkdown/images/parametersUMAP.png
docs/articles/pkdown/images/subclusteranalysis1.png
docs/articles/pkdown/images/subclusteranalysis2.png
docs/articles/pkdown/images/table1.png
docs/articles/pkdown/images/tableAll.png
docs/articles/pkdown/images/tableReorder.png
docs/articles/pkdown/images/tableSelect2.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/dot-schnappsEnv.html
docs/reference/index.html
docs/reference/scEx.html
docs/reference/schnapps.html
images2/2Dplot1.png
images2/2dplotAddOptions.png
images2/2dplotSmallGrp.png
images2/CellSelection.png
images2/DataexplorationPanel.png
images2/coexpressionAll.png
images2/coexpressionSOM1.png
images2/coexpressionSOM2.png
images2/coexpressionSelected1.png
images2/coexpressionSelected2.png
images2/coexpressionSelected3.png
images2/coexpressionVioloin1.png
images2/coexpressionVioloin2.png
images2/dataexplorationExpression.png
images2/geneSelection1.png
images2/geneSelection2.png
images2/generalPC.png
images2/generalSample.png
images2/generalScater1.png
images2/generalScater2.png
images2/generalUMI.png
images2/heatmap1.png
images2/heatmap2.png
images2/heatmap3.png
images2/loadingData.png
images2/overview.png
images2/parametersGeneral.png
images2/parametersNormalization.png
images2/parametersTSNE.png
images2/parametersUMAP.png
images2/subclusteranalysis1.png
images2/subclusteranalysis2.png
images2/table1.png
images2/tableAll.png
images2/tableReorder.png
images2/tableSelect2.png
images2/test.png
inst/app/Readme.txt
inst/app/applySimpleR.R inst/app/contributions/DE_DataExploration/outputs.R inst/app/contributions/DE_DataExploration/parameters.R inst/app/contributions/DE_DataExploration/reactives.R inst/app/contributions/DE_DataExploration/report.Rmd inst/app/contributions/DE_DataExploration/ui.R inst/app/contributions/coE_coExpression/outputs.R inst/app/contributions/coE_coExpression/reactives.R inst/app/contributions/coE_coExpression/report.Rmd inst/app/contributions/coE_coExpression/ui.R inst/app/contributions/gQC_generalQC/outputs.R inst/app/contributions/gQC_generalQC/reactives.R inst/app/contributions/gQC_generalQC/report.Rmd inst/app/contributions/gQC_generalQC/ui.R inst/app/contributions/sCA_subClusterAnalysis/outputs.R inst/app/contributions/sCA_subClusterAnalysis/reactives.R inst/app/contributions/sCA_subClusterAnalysis/report.Rmd inst/app/contributions/sCA_subClusterAnalysis/ui.R inst/app/defaultValues.R
inst/app/geneLists.RData
inst/app/moduleServer.R inst/app/modulesUI.R inst/app/outputs.R inst/app/parameters.R inst/app/reactives.R inst/app/report.Rmd inst/app/runDevApp.R inst/app/server.R inst/app/serverFunctions.R inst/app/tabs.R inst/app/toolTips.R inst/app/ui.R inst/develo/Untitled.R inst/develo/Untitled2.R inst/develo/cellcycle.R inst/develo/changeVarName.R
inst/develo/changeVariables.txt
inst/develo/convert2v2.R inst/develo/createData.Rmd inst/develo/ensg2symbol.R inst/develo/heatMapBIG.Rmd
inst/develo/human_cycle_markers.rds
inst/develo/monocle3.wkfl.R
inst/develo/mouse_cycle_markers.rds
inst/develo/params-tests.R inst/develo/rmdShiny.Rmd inst/develo/singleR-MM.R
inst/exampledata/scEx.csv
inst/exampledata/scExCells.csv
inst/exampledata/scExGenes.csv
inst/www/faq.Rmd.md inst/www/faq.md
inst/www/images/DE_expression.png
inst/www/images/schnappsLogo.png
inst/www/screen_shots.md
logo.png
man/dot-schnappsEnv.Rd man/scEx.Rd man/schnapps.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
vignettes/.gitignore
vignettes/Readme.Rmd vignettes/pkdown/FAQs.Rmd vignettes/pkdown/SCHNAPPs_usage.Rmd vignettes/pkdown/children/child.tartour.anova.Rmd vignettes/pkdown/customReportFromHistory.Rmd
vignettes/pkdown/images/2Dplot1.png
vignettes/pkdown/images/2dplotAddOptions.png
vignettes/pkdown/images/2dplotSmallGrp.png
vignettes/pkdown/images/CellSelection.png
vignettes/pkdown/images/CellSelection2.png
vignettes/pkdown/images/DataexplorationPanel.png
vignettes/pkdown/images/beforeFilter.png
vignettes/pkdown/images/beforeFilterApplied.png
vignettes/pkdown/images/beforeFilterCellSelect.png
vignettes/pkdown/images/beforeFilterCellsRM.png
vignettes/pkdown/images/cd8vscd4.png
vignettes/pkdown/images/coexpressionAll.png
vignettes/pkdown/images/coexpressionSOM1.png
vignettes/pkdown/images/coexpressionSOM2.png
vignettes/pkdown/images/coexpressionSelected1.png
vignettes/pkdown/images/coexpressionSelected2.png
vignettes/pkdown/images/coexpressionSelected3.png
vignettes/pkdown/images/coexpressionSelected4.png
vignettes/pkdown/images/coexpressionViolin1.png
vignettes/pkdown/images/coexpressionViolin2.png
vignettes/pkdown/images/dataexplorationExpression.png
vignettes/pkdown/images/geneSelection0.png
vignettes/pkdown/images/geneSelection1.png
vignettes/pkdown/images/geneSelection2.png
vignettes/pkdown/images/geneSelectionRMGenes.png
vignettes/pkdown/images/geneSelectionRegEx.png
vignettes/pkdown/images/generalPC.png
vignettes/pkdown/images/generalSample.png
vignettes/pkdown/images/generalScater1.png
vignettes/pkdown/images/generalScater2.png
vignettes/pkdown/images/generalUMI.png
vignettes/pkdown/images/heatmap1.png
vignettes/pkdown/images/heatmap2.png
vignettes/pkdown/images/heatmap3.png
vignettes/pkdown/images/loadingData.png
vignettes/pkdown/images/normByRP.png
vignettes/pkdown/images/overview.png
vignettes/pkdown/images/parametersGeneral.png
vignettes/pkdown/images/parametersNormalization.png
vignettes/pkdown/images/parametersTSNE.png
vignettes/pkdown/images/parametersUMAP.png
vignettes/pkdown/images/subclusteranalysis1.png
vignettes/pkdown/images/subclusteranalysis2.png
vignettes/pkdown/images/table1.png
vignettes/pkdown/images/tableAll.png
vignettes/pkdown/images/tableReorder.png
vignettes/pkdown/images/tableSelect2.png
C3BI-pasteur-fr/UTechSCB-SCHNAPPs documentation built on March 15, 2020, 12:51 a.m.