Nanostring-Biostats/SpatialDecon: Deconvolution of mixed cells from spatial and/or bulk gene expression data
Using spatial or bulk gene expression data, estimates abundance of mixed cell types within each observation. Based on "Advances in mixed cell deconvolution enable quantification of cell types in spatial transcriptomic data", Danaher (2022). Designed for use with the NanoString GeoMx platform, but applicable to any gene expression data.
Getting started
Browse package contents
Package details |
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| Bioconductor views | FeatureExtraction GeneExpression ImmunoOncology Spatial Transcriptomics |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.13.2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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