download_profile_matrix: Download a cell profile matrix

In Nanostring-Biostats/SpatialDecon: Deconvolution of mixed cells from spatial and/or bulk gene expression data

Download a cell profile matrix

Description

Download a cell profile matrix from the online library

Usage

download_profile_matrix(species, age_group, matrixname)

Arguments

species	species of profile matrix
age_group	age_group of profile matrix, if fetal mouse please add the developmental stage separated with /, i.e. Fetal/E14.5
matrixname	name of profile matrix

Details

Valid matrices can be found on the github site https://github.com/Nanostring-Biostats/CellProfileLibrary/tree/master

Value

A cell profile matrix, suggested cell groups, and paper metadata

Examples

download_profile_matrix(species = "Human", age_group = "Adult", matrixname = "Colon_HCA")
head(profile_matrix)
print(cellGroups)
print(metadata)

Nanostring-Biostats/SpatialDecon documentation built on Jan. 26, 2024, 8:20 p.m.