Files in Nanostring-Biostats/SpatialDecon
Deconvolution of mixed cells from spatial and/or bulk gene expression data
.github/workflows/main.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/TIL_barplot.R
R/algorithm2.R
R/collapseCellTypes.R
R/convertCellScoresToCounts.R
R/convertCellTypes.R
R/create_profile_matrix.R
R/data.R
R/deconLNR.R
R/deriveWeights.R
R/derive_GeoMx_background.R
R/download_profile_matrix.R
R/flagOutliers.R
R/florets.R
R/mergeTumorIntoX.R
R/package.R
R/reverseDecon.R
R/runCollapseCellTypes.R
R/runErrorModel.R
R/runmergeTumorIntoXGeo.R
R/runreverseDeconGeo.R
R/runspatialdecon.R
R/spatialdecon.R
README.md
data/cellcols.RData
data/mean.resid.sd.RData
data/mini_geomx_dataset.RData
data/mini_singleCell_dataset.RData
data/nsclc.RData
data/safeTME.RData
data/safeTME.matches.RData
man/SpatialDecon-package.Rd
man/TIL_barplot.Rd
man/cellcols.Rd
man/collapseCellTypes.Rd
man/create_profile_matrix.Rd
man/derive_GeoMx_background.Rd
man/download_profile_matrix.Rd
man/florets.Rd
man/mean.resid.sd.Rd
man/mergeTumorIntoX.Rd
man/mini_geomx_dataset.Rd
man/mini_singleCell_dataset.Rd
man/nsclc.Rd
man/reverseDecon.Rd
man/runCollapseCellTypes.Rd
man/runErrorModel.Rd
man/runMergeTumorIntoX.Rd
man/runReverseDecon.Rd
man/runspatialdecon.Rd
man/safeTME.Rd
man/safeTME.matches.Rd
man/spatialdecon.Rd
tests/testthat.R
tests/testthat/expectedtestresults.RData
tests/testthat/test-integration-testing.R
tests/testthat/testdata.RData
vignettes/SpatialDecon_vignette.Rmd
vignettes/SpatialDecon_vignette_NSCLC.Rmd
