Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.
|Author||Ron Ammar [aut, cre], John Thompson [aut]|
|Bioconductor views||FeatureExtraction GeneExpression ImmunoOncology RNASeq Software|
|Maintainer||Ron Ammar <[email protected]>|
|License||GPL-3 | file LICENSE|
|Package repository||View on Bioconductor|
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