zFPKM: A suite of functions to facilitate zFPKM transformations

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

Package details

AuthorRon Ammar [aut, cre], John Thompson [aut]
Bioconductor views FeatureExtraction GeneExpression ImmunoOncology RNASeq Software
MaintainerRon Ammar <[email protected]>
LicenseGPL-3 | file LICENSE
Version1.6.0
URL https://github.com/ronammar/zFPKM/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("zFPKM")

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zFPKM documentation built on May 6, 2019, 3:24 a.m.