xiangpin/MicrobitaProcess: an package for analysis, visualization and biomarker discovery of microbiome

MicrobiotaProcess is an R package for analysis, visualization and biomarker discovery of microbial datasets. It supports calculating alpha index and provides functions to visualize rarefaction curves. Moreover, it also supports visualizing the abundance of taxonomy of samples. And It also provides functions to perform the PCA, PCoA and hierarchical cluster analysis. More importantly, MicrobiotaProcess also provides a method for the biomarker discovery of metagenome or other datasets.

Getting started

Package details

Bioconductor views FeatureExtraction Microbiome MultipleComparison Software Visualization
LicenseGPL (>= 2.0)
URL https://github.com/YuLab-SMU/MicrobiotaProcess/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
xiangpin/MicrobitaProcess documentation built on Nov. 12, 2019, 12:43 p.m.