xiangpin/MicrobitaProcess: an package for analysis, visualization and biomarker discovery of microbiome
MicrobiotaProcess is an R package for analysis, visualization and biomarker discovery of microbial datasets. It supports calculating alpha index and provides functions to visualize rarefaction curves. Moreover, it also supports visualizing the abundance of taxonomy of samples. And It also provides functions to perform the PCA, PCoA and hierarchical cluster analysis. More importantly, MicrobiotaProcess also provides a method for the biomarker discovery of metagenome or other datasets.
Getting started
Browse package contents
Package details |
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| Bioconductor views | FeatureExtraction Microbiome MultipleComparison Software Visualization |
| Maintainer | |
| License | GPL (>= 2.0) |
| Version | 0.99.0 |
| URL | https://github.com/YuLab-SMU/MicrobiotaProcess/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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