Files in xiangpin/MicrobitaProcess
an package for analysis, visualization and biomarker discovery of microbiome

.Rbuildignore
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
NAMESPACE
NEWS.md R/AllClass.R R/AllMethods.R R/CountOrRatios.R R/alldata.R R/cladehilight.R R/compare-method.R R/compare-utilities.R R/convert.R R/drop_taxa.R R/generalizedFC.R R/geom_ord_ellipse.R R/get_alphaindex.R R/get_clust.R R/get_ordination.R R/get_pca.R R/get_upset.R R/get_vennlist.R R/ggbox.R R/import_dada2.R R/import_qiime2.R R/ml-method.R R/plotdiffAnalysis.R R/rareplot.R R/retrieveSeq.R R/show-method.R R/splitData.R R/splitStrtoList.R R/taxplot.R R/utilities.R README.Rmd README.md
data/datalist
data/hmp_aerobiosis_small.rda
data/kostic2012crc.rda
data/test_otu_data.rda
inst/extdata/metadata_qza.txt
inst/extdata/mouse.time.dada2.txt
inst/extdata/mouse_feature_matrix.txt
inst/extdata/mouse_sample_info.txt
inst/extdata/mouse_taxda.txt
inst/extdata/otu_tax_table.txt
inst/extdata/sample_info.txt
inst/extdata/seqtab.nochim.rds
inst/extdata/table.qza
inst/extdata/taxa.qza
inst/extdata/taxa_tab.rds
man/CountOrRatios.Rd man/alphasample-class.Rd man/as.data.frame.Rd man/build_tree.Rd man/clustplotClass-class.Rd man/convert_to_treedata.Rd man/data-hmp_aerobiosis_small.Rd man/data-kostic2012crc.Rd man/data-test_otu_data.Rd man/diffAnalysisClass-class.Rd man/diff_analysis.Rd man/drop_taxa.Rd man/generalizedFC.Rd man/geom_ord_ellipse.Rd man/getMeanMedian.Rd man/get_alltaxadf.Rd man/get_alphaindex.Rd man/get_clust.Rd man/get_coord.Rd man/get_dist.Rd man/get_pca.Rd man/get_pcoa.Rd man/get_taxadf.Rd man/get_upset.Rd man/get_varct.Rd man/get_vennlist.Rd man/getpvalue.Rd man/ggbartax.Rd man/ggbox.Rd man/ggclust.Rd man/ggdiffclade.Rd man/ggdifftaxbar.Rd man/ggeffectsize.Rd man/ggordpoint.Rd man/ggrarecurve.Rd man/import_dada2.Rd man/import_qiime2.Rd man/mappingtaxda.Rd man/mapplyretrieveSeq.Rd man/multi.compare.Rd man/ordplotClass-class.Rd man/pcasample-class.Rd man/pcoa-class.Rd man/prcomp-class.Rd man/read.qza.Rd man/retrieveSeq.Rd man/sampledflist.Rd man/show-methods.Rd man/splitData.Rd man/splitStrtoList.Rd man/stat_rare.Rd man/theme_taxbar.Rd tests/testthat.R tests/testthat/test_convert.R tests/testthat/test_getcall.R tests/testthat/test_gettax.R tests/testthat/test_getvennlist.R tests/testthat/test_multicompare.R
xiangpin/MicrobitaProcess documentation built on Nov. 12, 2019, 12:43 p.m.