gusef/Iris: A package to extract spatial features based on multiplex IF images

IrisSpatialFeatures reads the output of the PerkinElmer inForm software and calculates a variety of spatial statistics. In addition to simple counts, it can derive average nearest neighbors for each cell-type and interaction summary profiles for each celltype. These statistics are derived across images, both overall and regions of interest as defined by user defined masks.

Getting started

Package details

AuthorDaniel Gusenleitner, Jason L. Weirather
Bioconductor views FeatureExtraction SingleCell
MaintainerDaniel Gusenleitner <>
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
gusef/Iris documentation built on May 14, 2019, 2:42 p.m.