extract_interactions: Extract interactions between all cell-types
In gusef/Iris: A package to extract spatial features based on multiplex IF images
Description
Usage
Arguments
Value
Examples
Description
Extract interactions between all cell-types
Usage
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extract_interactions(x, membrane_border_width_px = 2,
interaction_distance_px = 2, ...)
## S4 method for signature 'ImageSet'
extract_interactions(x, membrane_border_width_px,
interaction_distance_px)
Arguments
x
IrisSpatialFeatures ImageSet object
membrane_border_width_px
the width of the membrane border (default 2)
interaction_distance_px
distance beyond the membrane
...
Additional arguments
Value
list of interactions
Examples
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#loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_interactions(dataset)
gusef/Iris documentation built on May 14, 2019, 2:42 p.m.
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Description Usage Arguments Value Examples
Description
Extract interactions between all cell-types
Usage
1 2 3 4 5 6 | extract_interactions(x, membrane_border_width_px = 2,
interaction_distance_px = 2, ...)
## S4 method for signature 'ImageSet'
extract_interactions(x, membrane_border_width_px,
interaction_distance_px)
|
Arguments
x |
IrisSpatialFeatures ImageSet object |
membrane_border_width_px |
the width of the membrane border (default 2) |
interaction_distance_px |
distance beyond the membrane |
... |
Additional arguments |
Value
list of interactions
Examples
1 2 3 | #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_interactions(dataset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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