extract_interactions: Extract interactions between all cell-types

Description Usage Arguments Value Examples

Description

Extract interactions between all cell-types

Usage

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extract_interactions(x, membrane_border_width_px = 2,
  interaction_distance_px = 2, ...)

## S4 method for signature 'ImageSet'
extract_interactions(x, membrane_border_width_px,
  interaction_distance_px)

Arguments

x

IrisSpatialFeatures ImageSet object

membrane_border_width_px

the width of the membrane border (default 2)

interaction_distance_px

distance beyond the membrane

...

Additional arguments

Value

list of interactions

Examples

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#loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_interactions(dataset)

gusef/Iris documentation built on May 14, 2019, 2:42 p.m.