API for gusef/Iris
A package to extract spatial features based on multiplex IF images

Global functions
Coordinate Man page
Coordinate-class Man page
ImageSet Man page
ImageSet-class Man page
IrisSpatialFeatures Man page
IrisSpatialFeatures-package Man page Man page
IrisSpatialFeatures_data Man page
Sample Man page
Sample-class Man page
as.data.frame,ImageSet-method Man page
buildLabel Source code
collapseMatrices Source code
collapse_markers Man page
collapse_markers,ANY,ANY-method Man page
collapse_markers,ImageSet-method Man page
extract.nearest.neighbor,ANY,ANY-method Man page
extractCountsF Source code
extractNNVals Source code
extractRatios Source code
extractSimpleValues Source code
extract_ROI Man page
extract_ROI,ANY,ANY-method Man page
extract_ROI,ImageSet-method Man page
extract_count_features Source code
extract_features Man page
extract_features,ANY,ANY-method Man page
extract_features,ImageSet-method Man page
extract_interaction_combinations Source code
extract_interaction_features Source code
extract_interactions Man page
extract_interactions,ANY,ANY-method Man page
extract_interactions,ImageSet-method Man page
extract_mask Man page Source code
extract_nearest_neighbor Man page
extract_nearest_neighbor,ImageSet-method Man page
extract_nn_features Source code
extract_proximity Man page
extract_proximity,ImageSet-method Man page
extract_proximity_single Source code
feature_selection Man page Source code
fillMaskC Source code
fill_in_maps Source code
generate_mask Source code
generate_maskC Source code
getInteractionsC Source code
getNearestNeighbor Source code
getNeighbors Source code
getPaired Source code
getToNeighbors Source code
get_all_interactions Man page
get_all_interactions,ANY,ANY-method Man page
get_all_interactions,ImageSet-method Man page
get_all_nearest_neighbors Man page
get_all_nearest_neighbors,ANY,ANY-method Man page
get_all_nearest_neighbors,ImageSet-method Man page
get_all_proximities Man page
get_all_proximities,ANY,ANY-method Man page
get_all_proximities,ImageSet-method Man page
get_count_ratios Man page
get_count_ratios,ANY,ANY-method Man page
get_count_ratios,ImageSet-method Man page
get_counts_per_mm2 Man page
get_counts_per_mm2,ImageSet-method Man page
get_counts_per_mm2_noncollapsed Man page
get_counts_per_mm2_noncollapsed,ANY,ANY-method Man page
get_counts_per_mm2_noncollapsed,ImageSet-method Man page
get_interactions Man page
get_interactions,ANY,ANY-method Man page
get_interactions,ImageSet-method Man page
get_nearest_neighbors Man page
get_nearest_neighbors,ANY,ANY-method Man page
get_nearest_neighbors,ImageSet-method Man page
get_proximities Man page
get_proximities,ANY,ANY-method Man page
get_proximities,ImageSet-method Man page
get_single_int Source code
growMarginC Source code
interaction_maps Man page
interaction_maps,ANY,ANY-method Man page
interaction_maps,ImageSet-method Man page
neighbor.ray.plot,ANY,ANY-method Man page
neighbor_ray_plot Man page
neighbor_ray_plot,ImageSet-method Man page
overview_plot Man page
overview_plot,ANY,ANY-method Man page
overview_plot,ImageSet-method Man page
plot,ImageSet-method Man page
plotSE Source code
plot_interactions Man page
plot_interactions,ANY,ANY-method Man page
plot_interactions,ImageSet-method Man page
plot_nearest_neighbor Man page
plot_nearest_neighbor,ANY,ANY-method Man page
plot_nearest_neighbor,ImageSet-method Man page
plot_proximities Man page
plot_proximities,ANY,ANY-method Man page
plot_proximities,ImageSet-method Man page
raw_data Man page
raw_data-class Man page
rayplot_single_coordinate Man page
rayplot_single_coordinate,Coordinate-method Man page
read_raw Man page
read_raw,ANY,ANY-method Man page
read_raw,character-method Man page
run_proximity,ANY,ANY-method Man page
threshold_dataset Man page
threshold_dataset,ANY,ANY-method Man page
threshold_dataset,ImageSet-method Man page
watershedC Source code
gusef/Iris documentation built on Nov. 8, 2017, 12:04 p.m.