nn_comparison_dataframe: Compare nearest neighbors by a data.frame

In gusef/Iris: A package to extract spatial features based on multiplex IF images

Description

Compare nearest neighbors by a data.frame

Usage

nn_comparison_dataframe(x, markerA, markerB, reference, from_reference = TRUE)


  ## S4 method for signature 'ImageSet,character,character,character,logical'
nn_comparison_dataframe(x,
  markerA, markerB, reference, from_reference = TRUE)

Arguments

x	IrisSpatialFeatures ImageSet object that has had extract nearest neighbors run
markerA	First marker
markerB	Second marker
reference	Reference marker
from_reference	If true calculate distance from the reference to the markers by NN

Value

data.frame of markers and distances

Examples

#loading pre-read dataset
dataset <- IrisSpatialFeatures_data
extract_nearest_neighbor(dataset)

gusef/Iris documentation built on May 14, 2019, 2:42 p.m.