get_count_ratios: Get ratio of counts between two markers
In gusef/Iris: A package to extract spatial features based on multiplex IF images
Description
Usage
Arguments
Value
Examples
Description
Get ratio of counts between two markers
Usage
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get_count_ratios(x, ...)
## S4 method for signature 'ImageSet'
get_count_ratios(x, marker1, marker2, digits = 2)
Arguments
x
An IrisSpatialFeatures object
...
Additional arguments.
marker1
First cell-type.
marker2
Second cell-type.
digits
Number of digits that should be shown in the the results.
(Default: 2)
Value
Count ratio between two markers
Examples
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#loading pre-read dataset
dataset <- IrisSpatialFeatures_data
get_count_ratios(dataset,'SOX10+ PDL1-','SOX10+ PDL1+')
gusef/Iris documentation built on May 14, 2019, 2:42 p.m.
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Description Usage Arguments Value Examples
Description
Get ratio of counts between two markers
Usage
1 2 3 4 | get_count_ratios(x, ...)
## S4 method for signature 'ImageSet'
get_count_ratios(x, marker1, marker2, digits = 2)
|
Arguments
x |
An IrisSpatialFeatures object |
... |
Additional arguments. |
marker1 |
First cell-type. |
marker2 |
Second cell-type. |
digits |
Number of digits that should be shown in the the results. (Default: 2) |
Value
Count ratio between two markers
Examples
1 2 3 | #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
get_count_ratios(dataset,'SOX10+ PDL1-','SOX10+ PDL1+')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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