get_nearest_neighbors: Get the nearest neighbor for a specified cell-type
In gusef/Iris: A package to extract spatial features based on multiplex IF images
Description
Usage
Arguments
Value
Examples
Description
Get the nearest neighbor for a specified cell-type
Usage
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get_nearest_neighbors(x, ...)
## S4 method for signature 'ImageSet'
get_nearest_neighbors(x, marker)
Arguments
x
An IrisSpatialFeatures ImageSet object
...
Additional arguments
marker
Cell type for which the nearest neighbor should be calculated
Value
nearest neighbors for the specified cell-type
Examples
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#' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_nearest_neighbor(dataset,min_num_cells=2)
get_nearest_neighbors(dataset,"SOX10+ PDL1+")
gusef/Iris documentation built on May 14, 2019, 2:42 p.m.
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Description Usage Arguments Value Examples
Description
Get the nearest neighbor for a specified cell-type
Usage
1 2 3 4 | get_nearest_neighbors(x, ...)
## S4 method for signature 'ImageSet'
get_nearest_neighbors(x, marker)
|
Arguments
x |
An IrisSpatialFeatures ImageSet object |
... |
Additional arguments |
marker |
Cell type for which the nearest neighbor should be calculated |
Value
nearest neighbors for the specified cell-type
Examples
1 2 3 4 | #' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_nearest_neighbor(dataset,min_num_cells=2)
get_nearest_neighbors(dataset,"SOX10+ PDL1+")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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