binned_gated_nn_data_frame: Extract and dump nearest neighbor raw data

In gusef/Iris: A package to extract spatial features based on multiplex IF images

Description

Extract and dump nearest neighbor raw data

Usage

binned_gated_nn_data_frame(x, ...)

## S4 method for signature 'ImageSet'
binned_gated_nn_data_frame(x, from, to, bin_width = 20,
  max_distance = 300, use_pixel = FALSE, split_frames = FALSE)

Arguments

x	IrisSpatialFeatures ImageSet object
from	MarkerA
to	MarkerB
bin_width	width of bin
max_distance	fartherst distance from 0 to consider
use_pixel	show the distances in pixels or micrometers (default: FALSE)
split_frames	if true then output per-frame data instead of per-sample (default: FALSE)

Value

data frame of binned nn data

gusef/Iris documentation built on May 14, 2019, 2:42 p.m.