extract_ROI: Method that reduces the current dataset to a specific region...

In gusef/Iris: A package to extract spatial features based on multiplex IF images

Description

Method that reduces the current dataset to a specific region of interest, discarding all cell coordinates outside of that region

Usage

extract_ROI(x, ...)

## S4 method for signature 'ImageSet'
extract_ROI(x, ROI = "invasive_margin",
  verbose = FALSE)

Arguments

x	IrisSpatialFeatures ImageSet object
...	Additional arguments
ROI	Region of interest (default: 'invasive_margin')
verbose	Print some details (default: False)

Value

IrisSpatialFeatures ImageSet object

Examples

#loading pre-read dataset
dataset <- IrisSpatialFeatures_data
im_area <- extract_ROI(dataset,ROI='invasive_margin')

gusef/Iris documentation built on May 14, 2019, 2:42 p.m.