normal_nearest_neighbor_sample_once: Extract the distance to each nearest neighbor for specified...

Description Usage Arguments Value

Description

Extract the distance to each nearest neighbor for specified cell-types, normalized by downsampling each cell-type to the same size, for a single sample, with no resampling

Usage

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normal_nearest_neighbor_sample_once(sample_name, data, markers,
  minimum_cells = 50, grouped_sample = TRUE)

## S4 method for signature 'character,ImageSet'
normal_nearest_neighbor_sample_once(sample_name,
  data, markers, minimum_cells = 50, grouped_sample = TRUE)

Arguments

sample_name

sample_name sample name string

data

IrisSpatialFeatures ImageSet object

markers

vector of marker names to use

minimum_cells

the smallest number of cells (default:50)

grouped_sample

TRUE/FALSE if we want to group samples together and thus normalize the frames to the smallest frame count (Default: TRUE)

Value

data.frame


gusef/Iris documentation built on May 14, 2019, 2:42 p.m.