extract_features: Extract all spatial features

In gusef/Iris: A package to extract spatial features based on multiplex IF images

Description

Extract all spatial features

Usage

extract_features(x, ...)

## S4 method for signature 'ImageSet'
extract_features(x, name = "", rm.na = FALSE)

Arguments

x	IrisSpatialFeatures ImageSet object
...	Additional arguments
name	Prefix for all features, e.g. 'invasive_margin' (Default: ”)
rm.na	Should features with NA values be removed (Default: FALSE)

Value

dataframe of features

Examples

#' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_nearest_neighbor(dataset,min_num_cells=2)
dataset <- extract_proximity(dataset,only_closest=TRUE,radii=25)
dataset <- extract_interactions(dataset)
extract_features(dataset)

gusef/Iris documentation built on May 14, 2019, 2:42 p.m.