get_proximities: Get proximity data for a given cell-type
In gusef/Iris: A package to extract spatial features based on multiplex IF images
Description
Usage
Arguments
Value
Description
Get proximity data for a given cell-type
Get proximity data for a given cell-type
Usage
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get_proximities(x, ...)
## S4 method for signature 'ImageSet'
get_proximities(x, marker, normalize = TRUE)
get_proximities(x, ...)
## S4 method for signature 'ImageSet'
get_proximities(x, marker, normalize = TRUE)
Arguments
x
An IrisSpatialFeatures ImageSet object.
...
Additional arguments.
marker
Cell type for which the proximity data should be extracted.
normalize
Flag indicating whether the populations should be normalized so that the sum of all is 1 (default: TRUE).
x
An IrisSpatialFeatures ImageSet object.
marker
Cell type for which the proximity data should be extracted.
normalize
Flag indicating whether the populations should be normalized so that the sum of all is 1 (default: TRUE).
...
Additional arguments.
Value
proximities for a specific cell-type
proximities for a specific cell-type
gusef/Iris documentation built on May 14, 2019, 2:42 p.m.
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Description Usage Arguments Value
Description
Get proximity data for a given cell-type
Get proximity data for a given cell-type
Usage
1 2 3 4 5 6 7 8 9 | get_proximities(x, ...)
## S4 method for signature 'ImageSet'
get_proximities(x, marker, normalize = TRUE)
get_proximities(x, ...)
## S4 method for signature 'ImageSet'
get_proximities(x, marker, normalize = TRUE)
|
Arguments
x |
An IrisSpatialFeatures ImageSet object. |
... |
Additional arguments. |
marker |
Cell type for which the proximity data should be extracted. |
normalize |
Flag indicating whether the populations should be normalized so that the sum of all is 1 (default: TRUE). |
x |
An IrisSpatialFeatures ImageSet object. |
marker |
Cell type for which the proximity data should be extracted. |
normalize |
Flag indicating whether the populations should be normalized so that the sum of all is 1 (default: TRUE). |
... |
Additional arguments. |
Value
proximities for a specific cell-type
proximities for a specific cell-type
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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