get_proximities: Get proximity data for a given cell-type

Description Usage Arguments Value

Description

Get proximity data for a given cell-type

Get proximity data for a given cell-type

Usage

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get_proximities(x, ...)

## S4 method for signature 'ImageSet'
get_proximities(x, marker, normalize = TRUE)

get_proximities(x, ...)

## S4 method for signature 'ImageSet'
get_proximities(x, marker, normalize = TRUE)

Arguments

x

An IrisSpatialFeatures ImageSet object.

...

Additional arguments.

marker

Cell type for which the proximity data should be extracted.

normalize

Flag indicating whether the populations should be normalized so that the sum of all is 1 (default: TRUE).

x

An IrisSpatialFeatures ImageSet object.

marker

Cell type for which the proximity data should be extracted.

normalize

Flag indicating whether the populations should be normalized so that the sum of all is 1 (default: TRUE).

...

Additional arguments.

Value

proximities for a specific cell-type

proximities for a specific cell-type


gusef/Iris documentation built on May 14, 2019, 2:42 p.m.