RDRToolbox: A package for nonlinear dimension reduction with Isomap and LLE.

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author
Christoph Bartenhagen
Date of publication
None
Maintainer
Christoph Bartenhagen <christoph.bartenhagen@ukmuenster.de>
License
GPL (>= 2)
Version
1.24.0

View on Bioconductor

Man pages

DBIndex
Davis-Bouldin-Index
generateData
Simulator for gene expression data
Isomap
Isomap
LLE
Locally Linear Embedding
plotDR
Plotting tool for two and three dimensional data
SwissRoll
The Swiss Roll dataset

Files in this package

RDRToolbox/.BBSoptions
RDRToolbox/DESCRIPTION
RDRToolbox/NAMESPACE
RDRToolbox/R
RDRToolbox/R/DBIndex.R
RDRToolbox/R/Isomap.R
RDRToolbox/R/LLE.R
RDRToolbox/R/SwissRoll.R
RDRToolbox/R/generateData.R
RDRToolbox/R/pairwiseDistances.R
RDRToolbox/R/plotDR.R
RDRToolbox/build
RDRToolbox/build/vignette.rds
RDRToolbox/inst
RDRToolbox/inst/doc
RDRToolbox/inst/doc/vignette.R
RDRToolbox/inst/doc/vignette.Rnw
RDRToolbox/inst/doc/vignette.pdf
RDRToolbox/man
RDRToolbox/man/DBIndex.Rd
RDRToolbox/man/Isomap.Rd
RDRToolbox/man/LLE.Rd
RDRToolbox/man/SwissRoll.Rd
RDRToolbox/man/generateData.Rd
RDRToolbox/man/plotDR.Rd
RDRToolbox/vignettes
RDRToolbox/vignettes/RDRToolbox-003.pdf
RDRToolbox/vignettes/SwissRoll.pdf
RDRToolbox/vignettes/plot3D.pdf
RDRToolbox/vignettes/vignette.Rnw
RDRToolbox/vignettes/vignette.bib