RDRToolbox: A package for nonlinear dimension reduction with Isomap and LLE.
Version 1.26.0

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

AuthorChristoph Bartenhagen
Bioconductor views Clustering DimensionReduction FeatureExtraction Microarray Visualization
Date of publicationNone
MaintainerChristoph Bartenhagen <christoph.bartenhagen@ukmuenster.de>
LicenseGPL (>= 2)
Version1.26.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")

Popular man pages

DBIndex: Davis-Bouldin-Index
generateData: Simulator for gene expression data
Isomap: Isomap
LLE: Locally Linear Embedding
plotDR: Plotting tool for two and three dimensional data
SwissRoll: The Swiss Roll dataset
See all...

All man pages Function index File listing

Man pages

DBIndex: Davis-Bouldin-Index
generateData: Simulator for gene expression data
Isomap: Isomap
LLE: Locally Linear Embedding
plotDR: Plotting tool for two and three dimensional data
SwissRoll: The Swiss Roll dataset

Functions

DBIndex Man page Source code
Isomap Man page Source code
LLE Man page Source code
SwissRoll Man page Source code
generateData Man page Source code
pairwiseDistances Source code
plotDR Man page Source code

Files

.BBSoptions
DESCRIPTION
NAMESPACE
R
R/DBIndex.R
R/Isomap.R
R/LLE.R
R/SwissRoll.R
R/generateData.R
R/pairwiseDistances.R
R/plotDR.R
build
build/vignette.rds
inst
inst/doc
inst/doc/vignette.R
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
man
man/DBIndex.Rd
man/Isomap.Rd
man/LLE.Rd
man/SwissRoll.Rd
man/generateData.Rd
man/plotDR.Rd
vignettes
vignettes/RDRToolbox-003.pdf
vignettes/SwissRoll.pdf
vignettes/plot3D.pdf
vignettes/vignette.Rnw
vignettes/vignette.bib
RDRToolbox documentation built on May 20, 2017, 10:35 p.m.

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