IrisSpatialFeatures reads the output of the PerkinElmer inForm software and calculates a variety of spatial statistics. In addition to simple counts, it can derive average nearest neighbors for each cell-type and interaction summary profiles for each celltype. These statistics are derived across images, both overall and regions of interest as defined by user defined masks.
|Author||Daniel Gusenleitner, Jason L. Weirather|
|Bioconductor views||FeatureExtraction SingleCell|
|Maintainer||Daniel Gusenleitner <Daniel_Gusenleitner@dfci.harvard.edu>|
|License||MIT + file LICENSE|
|Package repository||View on Bioconductor|
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