extract_features: Extract all spatial features
In IrisSpatialFeatures: A package to extract spatial features based on multiplex IF images
Description
Usage
Arguments
Value
Examples
Description
Extract all spatial features
Usage
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extract_features(x, ...)
## S4 method for signature 'ImageSet'
extract_features(x, name = "", rm.na = FALSE)
Arguments
x
IrisSpatialFeatures ImageSet object
...
Additional arguments
name
Prefix for all features, e.g. 'invasive_margin' (Default: ”)
rm.na
Should features with NA values be removed (Default: FALSE)
Value
dataframe of features
Examples
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#' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_nearest_neighbor(dataset,min_num_cells=2)
dataset <- extract_proximity(dataset,only_closest=TRUE,radii=25)
dataset <- extract_interactions(dataset)
extract_features(dataset)
IrisSpatialFeatures documentation built on May 2, 2018, 2:49 a.m.
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Description Usage Arguments Value Examples
Description
Extract all spatial features
Usage
1 2 3 4 | extract_features(x, ...)
## S4 method for signature 'ImageSet'
extract_features(x, name = "", rm.na = FALSE)
|
Arguments
x |
IrisSpatialFeatures ImageSet object |
... |
Additional arguments |
name |
Prefix for all features, e.g. 'invasive_margin' (Default: ”) |
rm.na |
Should features with NA values be removed (Default: FALSE) |
Value
dataframe of features
Examples
1 2 3 4 5 6 | #' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_nearest_neighbor(dataset,min_num_cells=2)
dataset <- extract_proximity(dataset,only_closest=TRUE,radii=25)
dataset <- extract_interactions(dataset)
extract_features(dataset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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