overview_plot: Plot all coordinates in a given dataset

In IrisSpatialFeatures: A package to extract spatial features based on multiplex IF images

Description

Plot all coordinates in a given dataset

Usage

overview_plot(x, ...)

## S4 method for signature 'ImageSet'
overview_plot(x, outdir = "./", palette = NULL,
  type = "pdf", width = 10, height = 7)

Arguments

x	Sample ImageSet object of the IrisSpatialFeatures package.
...	Additional arguments
outdir	Output directory (default: './')
palette	Color palette used for the different cell-types. (default: NULL)
type	File format for the plots. Can bei either 'pdf' or 'png'. (default: 'pdf')
width	Width of the plot in inches for pdf and pixels for png. (default: 10)
height	Heigth of the plot in inches for pdf and pixels for png. (default: 7)

Value

plot of all coordinates

Examples

#loading pre-read dataset
dataset <- IrisSpatialFeatures_data
overview_plot(dataset)

IrisSpatialFeatures documentation built on May 2, 2018, 2:49 a.m.