overview_plot: Plot all coordinates in a given dataset

Description Usage Arguments Value Examples

Description

Plot all coordinates in a given dataset

Usage

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overview_plot(x, ...)

## S4 method for signature 'ImageSet'
overview_plot(x, outdir = "./", palette = NULL,
  type = "pdf", width = 10, height = 7)

Arguments

x

Sample ImageSet object of the IrisSpatialFeatures package.

...

Additional arguments

outdir

Output directory (default: './')

palette

Color palette used for the different cell-types. (default: NULL)

type

File format for the plots. Can bei either 'pdf' or 'png'. (default: 'pdf')

width

Width of the plot in inches for pdf and pixels for png. (default: 10)

height

Heigth of the plot in inches for pdf and pixels for png. (default: 7)

Value

plot of all coordinates

Examples

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#loading pre-read dataset
dataset <- IrisSpatialFeatures_data
overview_plot(dataset)

IrisSpatialFeatures documentation built on May 2, 2018, 2:49 a.m.