get_interactions: Get interactions for a specific marker

In IrisSpatialFeatures: A package to extract spatial features based on multiplex IF images

Description

Get interactions for a specific marker

Usage

get_interactions(x, ...)

## S4 method for signature 'ImageSet'
get_interactions(x, marker, normalize = TRUE)

Arguments

x	An IrisSpatialFeatures ImageSet object
...	Additional arguments.
marker	Cell-type for which the interactions should be pulled
normalize	Flag to indicated whether to normalize each sample so all interactions sum up to 1 (Default: 1)

Value

interactions for a specific marker

Examples

#' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_interactions(dataset)
get_interactions(dataset,'CD8+ PD1+')

IrisSpatialFeatures documentation built on May 2, 2018, 2:49 a.m.