get_interactions: Get interactions for a specific marker

Description Usage Arguments Value Examples

Description

Get interactions for a specific marker

Usage

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get_interactions(x, ...)

## S4 method for signature 'ImageSet'
get_interactions(x, marker, normalize = TRUE)

Arguments

x

An IrisSpatialFeatures ImageSet object

...

Additional arguments.

marker

Cell-type for which the interactions should be pulled

normalize

Flag to indicated whether to normalize each sample so all interactions sum up to 1 (Default: 1)

Value

interactions for a specific marker

Examples

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#' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_interactions(dataset)
get_interactions(dataset,'CD8+ PD1+')

IrisSpatialFeatures documentation built on May 2, 2018, 2:49 a.m.