extract_ROI: Method that reduces the current dataset to a specific region...

In IrisSpatialFeatures: A package to extract spatial features based on multiplex IF images

Description

Method that reduces the current dataset to a specific region of interest, discarding all cell coordinates outside of that region

Usage

extract_ROI(x, ...)

## S4 method for signature 'ImageSet'
extract_ROI(x, ROI = "invasive_margin")

Arguments

x	IrisSpatialFeatures ImageSet object
...	Additional arguments
ROI	Region of interest (default: 'invasive_margin')

Value

IrisSpatialFeatures ImageSet object

Examples

#loading pre-read dataset
dataset <- IrisSpatialFeatures_data
im_area <- extract_ROI(dataset,ROI='invasive_margin')

IrisSpatialFeatures documentation built on May 2, 2018, 2:49 a.m.