collapse_markers: This function collapses two markers into one, and reruns the...
In IrisSpatialFeatures: A package to extract spatial features based on multiplex IF images
Description
Usage
Arguments
Value
Examples
Description
This function collapses two markers into one, and reruns the counting of cells.
Mostly a convenience function for the Shiny interface so we start with a completely split set
successively adding more markers
Usage
1
2
3
4
collapse_markers(image_set, marker1, marker2, combined)
## S4 method for signature 'ImageSet'
collapse_markers(image_set, marker1, marker2, combined)
Arguments
image_set
IrisSpatialFeatures ImageSet object.
marker1
Name of the first marker that should be collapsed.
marker2
Name of the second marker that should be collapsed.
combined
Name of the combined marker.
Value
IrisSpatialFeatures ImageSet object.
Examples
1
2
dataset <- IrisSpatialFeatures_data
ds <- collapse_markers(dataset,marker1="SOX10+ PDL1+",marker2="SOX10+ PDL1-", combined="SOX10+")
IrisSpatialFeatures documentation built on May 2, 2018, 2:49 a.m.
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Description Usage Arguments Value Examples
Description
This function collapses two markers into one, and reruns the counting of cells. Mostly a convenience function for the Shiny interface so we start with a completely split set successively adding more markers
Usage
1 2 3 4 | collapse_markers(image_set, marker1, marker2, combined)
## S4 method for signature 'ImageSet'
collapse_markers(image_set, marker1, marker2, combined)
|
Arguments
image_set |
IrisSpatialFeatures ImageSet object. |
marker1 |
Name of the first marker that should be collapsed. |
marker2 |
Name of the second marker that should be collapsed. |
combined |
Name of the combined marker. |
Value
IrisSpatialFeatures ImageSet object.
Examples
1 2 | dataset <- IrisSpatialFeatures_data
ds <- collapse_markers(dataset,marker1="SOX10+ PDL1+",marker2="SOX10+ PDL1-", combined="SOX10+")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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