mAPKL: A Hybrid Feature Selection method for gene expression data

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We propose a hybrid FS method (mAP-KL), which combines multiple hypothesis testing and affinity propagation (AP)-clustering algorithm along with the Krzanowski & Lai cluster quality index, to select a small yet informative subset of genes.

Author
Argiris Sakellariou
Date of publication
None
Maintainer
Argiris Sakellariou <argisake@gmail.com>
License
GPL (>= 2)
Version
1.4.2

View on Bioconductor

Man pages

annotate
Genome annotation of the "exemplars".
Annot-class
Class "Annot"
classification
Classify samples according to the SVM algorithm
Classify-class
Class "Classify"
DataLD-class
Class "DataLD"
loadFiles
Imports gene expression data
mAPKL
The mAP-KL algorithm
mAPKL-package
A hybrid feature selection method for gene expression data
mAPKLRes-class
Class "mAPKLRes"
metrics
Computes several clasification metrics
NetAttr-class
Class "NetAttr"
netwAttr
Calculates network characteristics
preprocess
Performs normalization and/or log2 transformation
probes2pathways
Extract pathways from "exemplars"
report
Produce an HTML report of the mAP-KL analysis
sampling
Splits a dataset to a train and a test sets of a user defined...

Files in this package

mAPKL/DESCRIPTION
mAPKL/NAMESPACE
mAPKL/NEWS
mAPKL/R
mAPKL/R/AllClasses.R
mAPKL/R/annotate.R
mAPKL/R/classification.R
mAPKL/R/loadFiles.R
mAPKL/R/mAPKL.R
mAPKL/R/metrics.R
mAPKL/R/netwAttr.R
mAPKL/R/preprocess.R
mAPKL/R/probes2pathways.R
mAPKL/R/report.R
mAPKL/R/sampling.R
mAPKL/build
mAPKL/build/vignette.rds
mAPKL/inst
mAPKL/inst/doc
mAPKL/inst/doc/mAPKL.R
mAPKL/inst/doc/mAPKL.Rnw
mAPKL/inst/doc/mAPKL.pdf
mAPKL/inst/unitTests
mAPKL/inst/unitTests/test_annotate.R
mAPKL/inst/unitTests/test_metrics.R
mAPKL/inst/unitTests/test_sampling.R
mAPKL/mAPKL_1.1.1.tar.gz
mAPKL/man
mAPKL/man/Annot-class.Rd
mAPKL/man/Classify-class.Rd
mAPKL/man/DataLD-class.Rd
mAPKL/man/NetAttr-class.Rd
mAPKL/man/annotate.Rd
mAPKL/man/classification.Rd
mAPKL/man/figures
mAPKL/man/figures/Thumbs.db
mAPKL/man/figures/density_train.jpeg
mAPKL/man/figures/network.jpg
mAPKL/man/figures/report.jpg
mAPKL/man/loadFiles.Rd
mAPKL/man/mAPKL-package.Rd
mAPKL/man/mAPKL.Rd
mAPKL/man/mAPKLRes-class.Rd
mAPKL/man/metrics.Rd
mAPKL/man/netwAttr.Rd
mAPKL/man/preprocess.Rd
mAPKL/man/probes2pathways.Rd
mAPKL/man/report.Rd
mAPKL/man/sampling.Rd
mAPKL/tests
mAPKL/tests/runTests.R
mAPKL/vignettes
mAPKL/vignettes/Thumbs.db
mAPKL/vignettes/mAPKL.Rnw