bambu is a R package for multi-sample transcript discovery and quantification using long read RNA-Seq data. You can use bambu after read alignment to obtain expression estimates for known and novel transcripts and genes. The output from bambu can directly be used for visualisation and downstream analysis such as differential gene expression or transcript usage.
|Author||Ying Chen [cre, aut], Yuk Kei Wan [aut], Jonathan Goeke [aut]|
|Bioconductor views||Alignment Coverage DifferentialExpression FeatureExtraction GeneExpression GenomeAnnotation GenomeAssembly ImmunoOncology MultipleComparison Normalization RNASeq Regression Sequencing Software Transcription Transcriptomics|
|Maintainer||Ying Chen <email@example.com>|
|License||GPL-3 + file LICENSE|
|Package repository||View on Bioconductor|
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