bambu: Reference-guided isoform reconstruction and quantification for long read RNA-Seq data

bambu is a R package for multi-sample transcript discovery and quantification using long read RNA-Seq data. You can use bambu after read alignment to obtain expression estimates for known and novel transcripts and genes. The output from bambu can directly be used for visualisation and downstream analysis such as differential gene expression or transcript usage.

Package details

AuthorYing Chen [cre, aut], Yuk Kei Wan [aut], Jonathan Goeke [aut]
Bioconductor views Alignment Coverage DifferentialExpression FeatureExtraction GeneExpression GenomeAnnotation GenomeAssembly ImmunoOncology MultipleComparison Normalization RNASeq Regression Sequencing Software Transcription Transcriptomics
MaintainerYing Chen <>
LicenseGPL-3 + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the bambu package in your browser

Any scripts or data that you put into this service are public.

bambu documentation built on Nov. 12, 2020, 2:01 a.m.