prepareAnnotations: prepare annotations from txdb object or gtf file
In bambu: Reference-guided isoform reconstruction and quantification for long read RNA-Seq data

Function to prepare tables and genomic ranges for transript reconstruction using a txdb object

1	prepareAnnotations(x)

`x`	A `TxDb` object or a gtf file

A GRangesList object

gtf.file <- system.file("extdata",
    "Homo_sapiens.GRCh38.91_chr9_1_1000000.gtf",
    package = "bambu"
)
prepareAnnotations(x = gtf.file)

bambu documentation built on Nov. 12, 2020, 2:01 a.m.

bambu index

README.md Analysing Long Read RNA-Seq data with bambu

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Description