writeToGTF: write GRangeslist into GTF file
In bambu: Reference-guided isoform reconstruction and quantification for long read RNA-Seq data
Description
Usage
Arguments
Value
Examples
Description
Write annotation GRangesList into a GTF file
Usage
1
writeToGTF(annotation, file, geneIDs = NULL)
Arguments
annotation
a GRangesList object
file
the output gtf file name
geneIDs
an optional dataframe of geneIDs (column 2) with
the corresponding transcriptIDs (column 1)
Value
gtf a GTF dataframe
Examples
1
2
3
4
5
6
outputGtfFile <- tempfile()
gr <- readRDS(system.file("extdata",
"annotationGranges_txdbGrch38_91_chr9_1_1000000.rds",
package = "bambu"
))
writeToGTF(gr, outputGtfFile)
bambu documentation built on Nov. 12, 2020, 2:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Write annotation GRangesList into a GTF file
Usage
1 | writeToGTF(annotation, file, geneIDs = NULL)
|
Arguments
annotation |
a |
file |
the output gtf file name |
geneIDs |
an optional dataframe of geneIDs (column 2) with the corresponding transcriptIDs (column 1) |
Value
gtf a GTF dataframe
Examples
1 2 3 4 5 6 | outputGtfFile <- tempfile()
gr <- readRDS(system.file("extdata",
"annotationGranges_txdbGrch38_91_chr9_1_1000000.rds",
package = "bambu"
))
writeToGTF(gr, outputGtfFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.