GoekeLab/bambu: Reference-guided isoform reconstruction and quantification for long read RNA-Seq data

bambu is a R package for multi-sample transcript discovery and quantification using long read RNA-Seq data. You can use bambu after read alignment to obtain expression estimates for known and novel transcripts and genes. The output from bambu can directly be used for visualisation and downstream analysis such as differential gene expression or transcript usage.

Getting started

Package details

Bioconductor views Alignment Coverage DifferentialExpression FeatureExtraction GeneExpression GenomeAnnotation GenomeAssembly ImmunoOncology MultipleComparison Normalization RNASeq Regression Sequencing Software Transcription Transcriptomics
Maintainer
LicenseGPL-3 + file LICENSE
Version1.1.3
URL https://github.com/GoekeLab/bambu
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("GoekeLab/bambu")
GoekeLab/bambu documentation built on April 27, 2021, 9:50 a.m.