ronammar/zFPKM: A suite of functions to facilitate zFPKM transformations
Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | FeatureExtraction GeneExpression ImmunoOncology RNASeq Software |
| Maintainer | |
| License | GPL-3 | file LICENSE |
| Version | 1.0.3 |
| URL | https://github.com/ronammar/zFPKM/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
