iSEE: Interactive SummarizedExperiment Explorer

Provides functions for creating an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. Particular attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

Package details

AuthorKevin Rue-Albrecht [aut] (<https://orcid.org/0000-0003-3899-3872>), Federico Marini [aut] (<https://orcid.org/0000-0003-3252-7758>), Charlotte Soneson [aut, cre] (<https://orcid.org/0000-0003-3833-2169>), Aaron Lun [aut] (<https://orcid.org/0000-0002-3564-4813>)
Bioconductor views CellBasedAssays Clustering DimensionReduction FeatureExtraction GUI GeneExpression ImmunoOncology SingleCell Transcription Transcriptomics Visualization
MaintainerCharlotte Soneson <[email protected]>
LicenseMIT + file LICENSE
Version1.6.0
URL https://github.com/csoneson/iSEE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("iSEE")

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iSEE documentation built on Oct. 31, 2019, 3:17 a.m.