iSEE: Interactive SummarizedExperiment Explorer

Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

README.md > > > > Controlling the `iSEE` interface using speech recognition Deploying custom panels in the `iSEE` interface Describing the `ExperimentColorMap` class

Vignettes Man pages API and functions Files

Package details
Author	Kevin Rue-Albrecht [aut, cre] (<https://orcid.org/0000-0003-3899-3872>), Federico Marini [aut] (<https://orcid.org/0000-0003-3252-7758>), Charlotte Soneson [aut] (<https://orcid.org/0000-0003-3833-2169>), Aaron Lun [aut] (<https://orcid.org/0000-0002-3564-4813>)
Bioconductor views	CellBasedAssays Clustering DimensionReduction FeatureExtraction GUI GeneExpression ImmunoOncology SingleCell Transcription Transcriptomics Visualization
Maintainer	Kevin Rue-Albrecht <kevinrue67@gmail.com>
License	MIT + file LICENSE
Version	2.2.4
URL	https://github.com/iSEE/iSEE
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("iSEE")`