iSEE: Interactive SummarizedExperiment Explorer

Provides functions for creating an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. Particular attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

Package details

AuthorKevin Rue-Albrecht [aut] (<>), Federico Marini [aut] (<>), Charlotte Soneson [aut, cre] (<>), Aaron Lun [aut] (<>)
Bioconductor views CellBasedAssays Clustering DimensionReduction FeatureExtraction GUI GeneExpression ImmunoOncology SingleCell Transcription Transcriptomics Visualization
MaintainerCharlotte Soneson <[email protected]>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
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iSEE documentation built on Oct. 31, 2019, 3:17 a.m.