API for iSEE
Interactive SummarizedExperiment Explorer

Global functions
.activeColormap Source code
.add_color_to_column_plot Source code
.add_color_to_row_plot Source code
.add_command Source code
.add_custom_panel_parameters Source code
.add_facet_UI_elements_for_column_plots Source code
.add_facet_UI_elements_for_row_plots Source code
.add_facets Source code
.add_general_parameters Source code
.add_general_parameters_for_column_plots Source code
.add_general_parameters_for_row_plots Source code
.add_other_UI_elements Source code
.add_point_UI_elements Source code
.any_active_selection Source code
.any_saved_selection Source code
.assayAllColorMap Source code
.assayColorMap Source code
.assay_axis_label Source code
.assay_plot_observers Source code
.box_observers Source code
.brush_observers Source code
.build_aes Source code
.build_labs Source code
.check_plot_feasibility Source code
.child_propagation_observers Source code
.choose_link Source code
.choose_new_selection_source Source code
.choose_plot_type Source code
.cluster_genes Source code
.coerce_box_status Source code
.coerce_type Source code
.colDataAllColorMap Source code
.colDataColorMap Source code
.colorByChoices Source code
.conditional_on_check_group Source code
.conditional_on_check_solo Source code
.conditional_on_radio Source code
.create_color_scale Source code
.create_plot Source code
.create_points Source code
.create_selection_param_box Source code
.create_visual_box_for_column_plots Source code
.create_visual_box_for_row_plots Source code
.custom_panel_observers Source code
.decode_panel_name Source code
.decoded2encoded Source code
.defaultColorMap Source code
.defaultDiscreteColorMap Source code
.define_color_options_for_column_plots Source code
.define_color_options_for_row_plots Source code
.define_colorby_for_column_plot Source code
.define_colorby_for_row_plot Source code
.define_facetby_for_column_plot Source code
.define_facetby_for_row_plot Source code
.define_groups Source code
.define_link_sources Source code
.define_plot_links Source code
.define_selection_choices Source code
.define_selection_param_box Source code
.define_selection_transmitter Source code
.define_shape_options_for_column_plots Source code
.define_shape_options_for_row_plots Source code
.define_shapeby_for_column_plot Source code
.define_shapeby_for_row_plot Source code
.define_size_options_for_column_plots Source code
.define_size_options_for_row_plots Source code
.define_sizeby_for_column_plot Source code
.define_sizeby_for_row_plot Source code
.define_table_links Source code
.define_visual_options Source code
.delete_table_links Source code
.deparse_for_viewing Source code
.destroy_selection_panel Source code
.destroy_table Source code
.digitalizeNumbers Source code
.disableButtonIf Source code
.dot_plot_observers Source code
.downsample_points Source code
.encode_panel_name Source code
.establish_eval_order Source code
.evaluate_commands Source code
.extract_nested_DF Source code
.extract_plotting_data Source code
.feature_axis_label Source code
.find_selectby_field Source code
.general_observers Source code
.getValidParameterChoices Source code
.get_colorscale_limits Source code
.get_direct_children Source code
.get_heatmap_fill_cmd Source code
.get_internal_info Source code
.get_reporting_order Source code
.get_selected_points Source code
.globalColorMap Source code
.heatmap_observers Source code
.hidePanel Source code
.identical_brushes Source code
.increment_counter Source code
.initialize_cmd_store Source code
.isDigits Source code
.is_groupable Source code
.is_lasso Source code
.lasso_observers Source code
.linked_table_observers Source code
.make_colDataPlot Source code
.make_customDataPlot Source code
.make_featAssayPlot Source code
.make_heatMapPlot Source code
.make_redDimPlot Source code
.make_rowDataPlot Source code
.make_sampAssayPlot Source code
.make_single_aes Source code
.make_single_lab Source code
.modify_table_links Source code
.multiple_select_observers Source code
.multiselect_param_observers Source code
.name2index Source code
.nearestDecodedPanel Source code
.nearestPanelType Source code
.nearestValidChoice Source code
.nearestValidNamedChoice Source code
.nlevels Source code
.nullColorMap Source code
.onLoad Source code
.organization_observers Source code
.override_defaults Source code
.panel_generation Source code
.panel_organization Source code
.plot_wrapper Source code
.populate_selection_environment Source code
.precompute_UI_info Source code
.prepareBugsEasterEgg Source code
.process_custom_selections Source code
.process_selectby_choice Source code
.reddim_plot_observers Source code
.regenerate_unselected_plot Source code
.replaceAssayColorMap Source code
.replaceColDataColorMap Source code
.replaceRowDataColorMap Source code
.report_memory Source code
.rowDataAllColorMap Source code
.rowDataColorMap Source code
.safe_field_name Source code
.sample_axis_label Source code
.sanitize_SE_input Source code
.sanitize_controlled_colormaps Source code
.sanitize_memory Source code
.sanitize_names Source code
.scatter_plot Source code
.selection_parameter_observers Source code
.selectize_update_observers Source code
.self_brush_box Source code
.self_lasso_path Source code
.set_default_assay Source code
.setup_initial Source code
.setup_memory Source code
.setup_table_observer Source code
.showPanel Source code
.snapshot_graph_linkedpanels Source code
.spawn_selection_chart Source code
.spawn_table_links Source code
.split_decoded Source code
.split_encoded Source code
.square_plot Source code
.square_setup Source code
.substituteNullColorMap Source code
.text2args Source code
.text_eval Source code
.track_custom_code Source code
.track_heatmap_code Source code
.track_it_all Source code
.track_plotting_code Source code
.track_selection_code Source code
.transform_global_to_local_y Source code
.transmitted_selection Source code
.update_lasso Source code
.update_list_element Source code
.valid.Colormap Source code
.violin_plot Source code
.violin_setup Source code
.voice_control_observers Source code
.which_groupable Source code
.which_numeric Source code
.zoom_observers Source code
ExperimentColorMap Man page Source code
ExperimentColorMap-class Man page
annotateEnsembl Man page Source code
annotateEntrez Man page Source code
assay,ExperimentColorMap,character-method Man page
assay,ExperimentColorMap,numeric-method Man page
assayColorMap Man page
assayColorMap,ExperimentColorMap,character-method Man page
assayColorMap,ExperimentColorMap,numeric-method Man page
assayColorMap<- Man page
assayColorMap<-,ExperimentColorMap,character-method Man page
assayColorMap<-,ExperimentColorMap,numeric-method Man page
assayNames,ExperimentColorMap-method Man page
assayNames<-,ExperimentColorMap,ANY-method Man page
assays,ExperimentColorMap-method Man page
assays<-,ExperimentColorMap,list-method Man page
availablePanelTypes Man page
checkColormapCompatibility Man page Source code
class:ExperimentColorMap Man page
colData,ExperimentColorMap-method Man page
colData<-,ExperimentColorMap,ANY-method Man page
colDataColorMap Man page
colDataColorMap,ExperimentColorMap,character-method Man page
colDataColorMap<- Man page
colDataColorMap<-,ExperimentColorMap,character-method Man page
colDataPlotDefaults Man page Source code
colStatTableDefaults Man page Source code
collapseBox Source code
customDataPlotDefaults Man page Source code
customStatTableDefaults Man page Source code
featAssayPlotDefaults Man page Source code
heatMapPlotDefaults Man page Source code
iSEE Man page Source code
iSEE point parameters Man page
iSEE selection parameters Man page
iSEE-pkg Man page
iSEE-pkg-package Man page
jitterSquarePoints Man page Source code
jitterViolinPoints Man page Source code
lassoPoints Man page Source code
modeEmpty Man page Source code
modeGating Man page Source code
panelCodes Man page
panelTypes Man page
prepareSpeechRecognition Man page Source code
redDimPlotDefaults Man page Source code
rowData,ExperimentColorMap-method Man page
rowData<-,ExperimentColorMap,ANY-method Man page
rowDataColorMap Man page
rowDataColorMap,ExperimentColorMap,character-method Man page
rowDataColorMap<- Man page
rowDataColorMap<-,ExperimentColorMap,character-method Man page
rowDataPlotDefaults Man page Source code
rowStatTableDefaults Man page Source code
sampAssayPlotDefaults Man page Source code
subsetPointsByGrid Man page Source code
synchronizeAssays Man page Source code
iSEE documentation built on Oct. 31, 2019, 3:17 a.m.