afukushima/MSEAp: Metabolite Set Enrichment Analysis (MSEA)

Metabolite Set Enrichment Analysis (MSEA) is an approach designed to help metabolomics guys identify and interpret changes in metabolite level in a biologically meaningful way (e.g. pathway-based interpretation). This is conceptually very similar to Gene Set Enrichment Analysis (GSEA). The MSEAp package provides a basic function to perform MSEA based on Fisher's exact test and a simple plot function. Users can do metabolite enrichment analysis on their own data with KEGG and HMDB identifiers. Constructing their own metabolite-set is also supported.

Getting started

Package details

Bioconductor views GeneSetEnrichment GraphAndNetwork KEGG Metabolomics Network NetworkEnrichment Pathways Software
Licensefile LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
afukushima/MSEAp documentation built on Sept. 18, 2019, 7:12 p.m.