read.gmt: parse gmt file to a list format
In afukushima/MSEAp: Metabolite Set Enrichment Analysis (MSEA)
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function parses gmt file to a list format
for enrichment analysis.
Usage
1
Arguments
file
*.gmt file (a TAB-delimited file)
format
select the compound DB-IDs ('KEGG', 'HMDB', 'KNApSacK')
Value
list
Author(s)
Atsushi Fukushima
Examples
1
2
file <- system.file('extdata', 'sample_SMPDB.gmt', package = 'MSEAp')
smp <- read.gmt(file)
afukushima/MSEAp documentation built on Sept. 18, 2019, 7:12 p.m.
R Package Documentation
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Description Usage Arguments Value Author(s) Examples
Description
This function parses gmt file to a list format for enrichment analysis.
Usage
1 |
Arguments
file |
*.gmt file (a TAB-delimited file) |
format |
select the compound DB-IDs ('KEGG', 'HMDB', 'KNApSacK') |
Value
list
Author(s)
Atsushi Fukushima
Examples
1 2 | file <- system.file('extdata', 'sample_SMPDB.gmt', package = 'MSEAp')
smp <- read.gmt(file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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