dotplot: plot count-sized dot on (x, y) = (metabolite-sets, pvalue)

In afukushima/MSEAp: Metabolite Set Enrichment Analysis (MSEA)

Description

plot count-sized dot on (x, y) = (metabolite-sets, pvalue)

Usage

dotplot(x, FDR = TRUE, show.limit = 20)

Arguments

x	A msea object
FDR	false dicovery rate (default TRUE)
show.limit	the number of metabolite-sets to plot

Value

plot

Examples

library(MSEApdata)
data(mset_SMPDB_Metabolic_format_HMDB)
data(msea.example)
res <- msea(mset_SMPDB_Metabolic_format_HMDB, msea.example)
dotplot(res)

afukushima/MSEAp documentation built on Sept. 18, 2019, 7:12 p.m.