msea: identifies biologically meaningful accumulations in...

In afukushima/MSEAp: Metabolite Set Enrichment Analysis (MSEA)

Description

This function performs Metabolite Set Enrichment Analysis (MSEA) with KEGG COMPOUND IDs.

Usage

msea(metabolite.set, queryset, atype = "E", midp = FALSE)

Arguments

metabolite.set	a list of metabolite sets
queryset	a list of metabolites for which test is to be done
atype	a kind of alternative test (e.g., E, enrichment; D, depletion)
midp	logical. TRUE gives mid p-values

Value

msea object

Author(s)

Atsushi Fukushima

Examples

library(MSEApdata)
data(mset_SMPDB_format_KEGG)
data(kusano)

res <- msea(mset_SMPDB_format_KEGG, kusano)

afukushima/MSEAp documentation built on Sept. 18, 2019, 7:12 p.m.